exportVCF: Export VCF files

In rCNV: Detect Copy Number Variants from SNPs Data

Export VCF files

Description

A function to export tables/matrices in VCF format to VCF files

Usage

exportVCF(out.vcf, out.path, compress = TRUE)

Arguments

out.vcf	a matrix or data frame in vcf file format to be exported
out.path	a character string of output path for the vcf file; should end in the name as the vcf file and .vcf. See examples
compress	logical. whether to compress the output file. If TRUE, the file will be .gz compressed

Value

Exports a vcf file to a given destination

Author(s)

Piyal Karunarathne

Examples

## Not run: vcf.file.path <- paste0(path.package("rCNV"), "/example.raw.vcf.gz")
vcf <- readVCF(vcf.file.path)
exportVCF(vcf,"../exVcf.vcf")
## End(Not run)

rCNV documentation built on Sept. 30, 2024, 9:39 a.m.