power.bias: Simulate and plot detection power of bias in allele ratios
In rCNV: Detect Copy Number Variants from SNPs Data

power.bias

R Documentation

Simulate and plot detection power of bias in allele ratios

This function simulates 95% confidence level Z-score based detection power of allele biases for a given number of samples and a range of depths

power.bias(
  Dlist = c(2, 4, 8, 16),
  sam = 100,
  intensity = 0.005,
  nsims = 1000,
  p = 0.5,
  plot = TRUE
)

`Dlist`	numerical. vector of depths values to be tested
`sam`	numerical. number of samples
`intensity`	numerical. frequency of bias
`nsims`	numerical. number of simulations to be done for each sample
`p`	numerical. expected allele ratio (0.5 for data with known sequencing biases)
`plot`	logical. plot the output