maf: Remove MAF allele

In rCNV: Detect Copy Number Variants from SNPs Data

Remove MAF allele

Description

A function to remove the alleles with minimum allele frequency and keep only a bi-allelic matrix when loci are multi-allelic

Usage

maf(h.table, AD = TRUE, verbose = TRUE, parallel = FALSE)

Arguments

h.table	allele depth table generated from the function hetTgen
AD	logical. If TRUE a allele depth table similar to hetTgen output will be returns; If FALSE, individual AD values per SNP will be returned in a list.
verbose	logical. Show progress
parallel	logical. whether to parallelize the process

Value

A data frame or a list of minimum allele frequency removed allele depth

Author(s)

Piyal Karunarathne

Examples

## Not run: mf<-maf(ADtable)

rCNV documentation built on Sept. 30, 2024, 9:39 a.m.