decompose_genoprobs: Decomposition of conditional genotype probabilities

In rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects

Description

A function to decompose qtl's object of conditional genotype probabilities.

Usage

decompose_genoprobs(genoprobs, contrasts = NULL)

Arguments

genoprobs	Conditional genotype probabilities as taken from qtl::calc.genoprob().
contrasts	A vector composed of three TRUE/FALSE values, which represents the presence/absence of specific genotypes as c(TRUE/FALSE, TRUE/FALSE, TRUE/FALSE) = AA, AB, BB.

Value

A list of three numeric matrices for genotype probabilities AA, AB, and BB. Each contains elements of individuals x markers.

• AA Homozygote AA probabilities.

• AB Heterozygote AB probabilities for. NA if inbred lines

• BB Homozygote BB probabilities. NA if backcross lines

Author(s)

Yasuhiro Sato ([e-mail])

rNeighborQTL documentation built on April 9, 2021, 9:06 a.m.