Description Usage Arguments Value Author(s)
A function to calculate self QTL effects for all individuals, with given deviation coefficients and conditional genotype probabilities.
1 2 3 4 5 6 7 8 9 10 |
genoprobs |
Conditional genotype probabilities as taken from |
a2 |
A numeric scalar indicating additive deviation. |
d2 |
A numeric scalar indicating dominance deviation. |
contrasts |
A vector composed of three TRUE/FALSE values, which represents the presence/absence of specific genotypes as c(TRUE/FALSE, TRUE/FALSE, TRUE/FALSE) = AA, AB, BB. |
smap |
A matrix showing a spatial map for individuals. The first and second column include spatial positions along an x-axis and y-axis, respectively. |
scale |
A numeric scalar indicating the maximum spatial distance between a focal individual and neighbors to define neighbor effects. |
grouping |
An integer vector assigning each individual to a group. This argument can be used when |
d2sq0 |
An option to make AB/AB interaction effects zero. |
A numeric matrix containing individuals x marker elements for neighbor QTL effects.
Yasuhiro Sato (sato.yasuhiro.36c@kyoto-u.jp)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.