genoprobs2selfprobs: Calculating a set of self QTL effects from conditional...

Description Usage Arguments Value Author(s)

View source: R/genoprobs2selfprobs.R

Description

A function to reshape qtl's object of conditional genotype probabilities, and to calculate self QTL effects for all individuals with given deviation coefficients and conditional genotype probabilities.

Usage

1
genoprobs2selfprobs(genoprobs, a1, d1, contrasts = NULL)

Arguments

genoprobs

Conditional genotype probabilities as taken from qtl::calc.genoprob().

a1

A numeric scalar indicating additive deviation.

d1

A numeric scalar indicating dominance deviation.

contrasts

A vector composed of three TRUE/FALSE values, which represents the presence/absence of specific genotypes as c(TRUE/FALSE, TRUE/FALSE, TRUE/FALSE) = AA, AB, BB.

Value

A numeric matrix containing individuals x marker elements for self QTL effects.

Author(s)

Yasuhiro Sato (sato.yasuhiro.36c@kyoto-u.jp)


rNeighborQTL documentation built on April 9, 2021, 9:06 a.m.