genoprobs2selfprobs: Calculating a set of self QTL effects from conditional...
In rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects
Description
Usage
Arguments
Value
Author(s)
View source: R/genoprobs2selfprobs.R
Description
A function to reshape qtl's object of conditional genotype probabilities, and to calculate self QTL effects for all individuals with given deviation coefficients and conditional genotype probabilities.
Usage
1
genoprobs2selfprobs(genoprobs, a1, d1, contrasts = NULL)
Arguments
genoprobs
Conditional genotype probabilities as taken from qtl::calc.genoprob().
a1
A numeric scalar indicating additive deviation.
d1
A numeric scalar indicating dominance deviation.
contrasts
A vector composed of three TRUE/FALSE values, which represents the presence/absence of specific genotypes as c(TRUE/FALSE, TRUE/FALSE, TRUE/FALSE) = AA, AB, BB.
Value
A numeric matrix containing individuals x marker elements for self QTL effects.
Author(s)
Yasuhiro Sato (sato.yasuhiro.36c@kyoto-u.jp)
rNeighborQTL documentation built on April 9, 2021, 9:06 a.m.
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Description Usage Arguments Value Author(s)
View source: R/genoprobs2selfprobs.R
Description
A function to reshape qtl's object of conditional genotype probabilities, and to calculate self QTL effects for all individuals with given deviation coefficients and conditional genotype probabilities.
Usage
1 | genoprobs2selfprobs(genoprobs, a1, d1, contrasts = NULL)
|
Arguments
genoprobs |
Conditional genotype probabilities as taken from |
a1 |
A numeric scalar indicating additive deviation. |
d1 |
A numeric scalar indicating dominance deviation. |
contrasts |
A vector composed of three TRUE/FALSE values, which represents the presence/absence of specific genotypes as c(TRUE/FALSE, TRUE/FALSE, TRUE/FALSE) = AA, AB, BB. |
Value
A numeric matrix containing individuals x marker elements for self QTL effects.
Author(s)
Yasuhiro Sato (sato.yasuhiro.36c@kyoto-u.jp)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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