rNeighborQTL-package: rNeighbor QTL: quantitative trait loci mapping for neighbor...
In rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects
Description
Details
Author(s)
References
Description
The "rNeighborQTL" package provides a set of functions to perform a genome scan of neighbor QTL effects.
Theoretical background is described in Sato, Takeda & Nagano (2021).
See vignette("rNeighborQTL") for how to use this package.
Details
Neighbor QTL is an extended method of single-marker regression.
Taking conditional genotype probabilities from r/qtl package, the rNeighborQTL package performs an interval mapping of neighbor genotypic identity.
Alternative to QTL mapping, rNeighborGWAS package is also available for genome-wide association studies (GWAS) via CRAN at https://cran.r-project.org/package=rNeighborGWAS.
Author(s)
Yasuhiro Sato (sato.yasuhiro.36c@kyoto-u.jp)
References
Sato Y, Yamamoto E, Shimizu KK, Nagano AJ (2021) Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory. Heredity 126:597–614.
Sato Y, Takeda K, Nagano AJ (2021) Neighbor QTL: an interval mapping method for quantitative trait loci underlying plant neighborhood effects. G3; Genes|Genomes|Genetics 11:jkab017.
rNeighborQTL documentation built on April 9, 2021, 9:06 a.m.
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Description Details Author(s) References
Description
The "rNeighborQTL" package provides a set of functions to perform a genome scan of neighbor QTL effects.
Theoretical background is described in Sato, Takeda & Nagano (2021).
See vignette("rNeighborQTL") for how to use this package.
Details
Neighbor QTL is an extended method of single-marker regression.
Taking conditional genotype probabilities from r/qtl package, the rNeighborQTL package performs an interval mapping of neighbor genotypic identity.
Alternative to QTL mapping, rNeighborGWAS package is also available for genome-wide association studies (GWAS) via CRAN at https://cran.r-project.org/package=rNeighborGWAS.
Author(s)
Yasuhiro Sato (sato.yasuhiro.36c@kyoto-u.jp)
References
Sato Y, Yamamoto E, Shimizu KK, Nagano AJ (2021) Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory. Heredity 126:597–614.
Sato Y, Takeda K, Nagano AJ (2021) Neighbor QTL: an interval mapping method for quantitative trait loci underlying plant neighborhood effects. G3; Genes|Genomes|Genetics 11:jkab017.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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