neiprob: Calculating neighbor QTL effects

In rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects

Description

A function to calculate neighbor QTL effects between two individuals, with given deviation coefficients and conditional genotype probabilities.

Usage

neiprob(i, j, a2, d2, AA, AB, BB, d2sq0 = FALSE)

Arguments

i	ID of a target individual.
j	ID of an interacting neighbor.
a2	A numeric scalar indicating additive deviation.
d2	A numeric scalar indicating dominance deviation.
AA	An individual x marker matrix of conditional probabilities for AA genotype.
AB	An individual x marker matrix of conditional probabilities for AB genotype. Input NA if heterozygotes are absent.
BB	An individual x marker matrix of conditional probabilities for BB genotype. Input NA for backcross lines.
d2sq0	An option to make AB/AB interaction effects zero.

Value

A numeric vector containing each marker effect for individual i.

Author(s)

Yasuhiro Sato ([e-mail])

rNeighborQTL documentation built on April 9, 2021, 9:06 a.m.