summarise_experimentFiles: This function will find all initially processed output files...

In rSHAPE: Simulated Haploid Asexual Population Evolution

Description

This function will find all initially processed output files from individual replicates and return summary information. That information is saved to an RData file which will contain 3 objects: all_proccessedFiles, all_jobInfo, all_dividedFiles

Usage

  summarise_experimentFiles(func_experimentDir = getOption("shape_workDir"),
  func_saveFile = getOption("shape_procExp_filenames")["fileList"],
  func_search_filePattern = getOption("shape_processedData_filePattern"),
  func_sepString = getOption("shape_sepString"))

Arguments

func_experimentDir	This is the filepath to the root directoy under which all your experimental files can be found.
func_saveFile	This is the filepath and filename (ending in .RData please) to which the results of this step will be saved.
func_search_filePattern	This is a string which can be used to search and find the files which relate to the processed output of individual replicates rSHAPE runs.
func_sepString	This is the character string which was used for commonly collapsing elements in the rSHAPE run.

Note

There is no example as this cannot work without a complete rSHAPE experiment to be analysed.

rSHAPE documentation built on July 19, 2019, 5:05 p.m.