Files in rbamtools
Read and Write BAM (Binary Alignment) Files

MD5
NEWS
DESCRIPTION
NAMESPACE
ChangeLog
inst/COPYRIGHTS
inst/doc/rbamtools.Rnw
inst/doc/rbamtools.R inst/doc/rbamtools.pdf
inst/extdata/accepted_hits.bam
inst/extdata/test.fastq
inst/extdata/accepted_hits.bam.bai
vignettes/rbamtools.Rnw
vignettes/rbamtools.bib
R/segmentize.R R/rbamtools.R R/sampleBamFiles.R
src/range_partition.h
src/gapSiteListList.h
src/gapSiteList.h
src/extptr.h
src/align_list.h
src/Makevars.win
src/data_frame.h
src/align_counts.h
src/bitmask.h
src/rbamtools.h
src/rbamtools.cpp
src/Makevars
src/grange.h
src/gap_list.h
src/samtools/kseq.h
src/samtools/ksort.h
src/samtools/bam_sort.c
src/samtools/kstring.c
src/samtools/razf.h
src/samtools/sam.h
src/samtools/bam.h
src/samtools/sam_header.c
src/samtools/bgzf.c
src/samtools/kstring.h
src/samtools/faidx.c
src/samtools/bam_import.c
src/samtools/bam_endian.h
src/samtools/faidx.h
src/samtools/khash.h
src/samtools/bgzf.h
src/samtools/sam.c
src/samtools/LICENSE
src/samtools/razf.c
src/samtools/sam_header.h
src/samtools/bam_aux.c
src/samtools/bam.c
src/samtools/rdef.h
src/samtools/bam_index.c
man/rangeSegCount-class.Rd man/bamSave.Rd man/bamCountAll.Rd man/gapSiteList-class.Rd man/saveAldData.Rd man/extractBamRegions.Rd man/bamRange-class.Rd man/multseq.Rd man/readerToFastq.Rd man/rangeToFastq.Rd man/extractRanges.Rd man/getQualDf.Rd man/bamRange.Rd man/bamWriter.Rd man/GenomePartition-class.Rd man/bamAlign.Rd man/bamGapList-class.Rd man/getVal.Rd man/countNucs.Rd man/bamAlign-class.Rd man/bamHeaderText-class.Rd man/as.data.frame-methods.Rd man/bamWriter-class.Rd man/isOpen-methods.Rd man/segmentize.Rd man/getNextAlign-methods.Rd man/refSeqDict-class.Rd man/headerProgram-class.Rd man/exonLoessModel-class.Rd man/bamHeader-class.Rd man/groupRatio.Rd man/nucStats.Rd man/bamReader-class.Rd man/bamReader.Rd man/filename-methods.Rd man/geneAlignDepth-class.Rd man/alignDepth-class.Rd man/bamCount.Rd man/createIdxBatch.Rd man/bamClose-methods.Rd man/getHeaderText-methods.Rd man/readPooledBamGaps.Rd man/rbamtools-package.Rd man/gapList-class.Rd man/getRefData.Rd man/setVal.Rd man/bamSort.Rd man/readPooledBamGapDf.Rd man/countTextLines.Rd man/exonAlignDepth-class.Rd man/sampleBamFiles-class.Rd man/headerLine-class.Rd man/extractGeneRegions.Rd man/headerReadGroup-class.Rd
build/vignette.rds
tests/test-all.R
rbamtools documentation built on May 7, 2018, 5:04 p.m.