bamSave: Creation of a sorted copy of a BAM file.
The methods for
bamSave write BAM alignment data
(either single alignments as
bamAlign objects or
lists of alignments as
bamRange objects) out to a bamWriter.
Object of type
(Optional) Defines sequence association (ID) in
Reference sequence dictionary of output BAM file.
May be given as numeric, or character. When missing, ID
is determined from reference name (only for
The different methods specialize on different methods for determining the Reference sequence ID in the output file.
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