readPooledBamGaps: readPooledBamGaps: Position data for alignments gaps from...
In rbamtools: Read and Write BAM (Binary Alignment) Files
Description
Usage
Arguments
Value
Author(s)
Examples
Description
The function takes vectors of BAM-file names
(plus accompanying names of BAM-index-files) and return a bamGapList object.
The bamGapList object can be merged with other bamGapList objects and data
can be extracted with the 'as.data.frame' method.
Usage
1
readPooledBamGaps(infiles,idxInfiles=paste(infiles,".bai",sep=""))
Arguments
infiles
Filenames of BAM-files to be opened for data extraction.
idxInfiles
Optional: Name of BAM-index files
Value
bamGapList
Author(s)
Wolfgang Kaisers
Examples
1
2
3
4
bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
rpb<-readPooledBamGaps(bam)
rpdf<-readPooledBamGapDf(bam)
hist(rpdf$gqs)
rbamtools documentation built on Nov. 11, 2019, 5:09 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
The function takes vectors of BAM-file names (plus accompanying names of BAM-index-files) and return a bamGapList object. The bamGapList object can be merged with other bamGapList objects and data can be extracted with the 'as.data.frame' method.
Usage
1 | readPooledBamGaps(infiles,idxInfiles=paste(infiles,".bai",sep=""))
|
Arguments
infiles |
Filenames of BAM-files to be opened for data extraction. |
idxInfiles |
Optional: Name of BAM-index files |
Value
bamGapList
Author(s)
Wolfgang Kaisers
Examples
1 2 3 4 | bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
rpb<-readPooledBamGaps(bam)
rpdf<-readPooledBamGapDf(bam)
hist(rpdf$gqs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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