createIdxBatch: createIdxBatch: Creation of index files for multiple BAM...
In rbamtools: Read and Write BAM (Binary Alignment) Files
Description
Usage
Arguments
Author(s)
Examples
Description
The function takes a vector of BAM-file names
(plus optionally accompanying names of BAM-index-files) and checks for
existing BAM-index files.
When index files do not exist, the function creates the missing index files.
Usage
1
createIdxBatch(bam,idx=paste(bam,".bai",sep=""),rebuild=FALSE)
Arguments
bam
Filenames of BAM-files to be opened.
idx
Optional: Name of BAM-index files
rebuild
Optional: Logical value.
When TRUE the function rebuilds existing BAM-index files.
Author(s)
Wolfgang Kaisers
Examples
1
2
bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
createIdxBatch(bam)
rbamtools documentation built on Nov. 11, 2019, 5:09 p.m.
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Description Usage Arguments Author(s) Examples
Description
The function takes a vector of BAM-file names (plus optionally accompanying names of BAM-index-files) and checks for existing BAM-index files. When index files do not exist, the function creates the missing index files.
Usage
1 | createIdxBatch(bam,idx=paste(bam,".bai",sep=""),rebuild=FALSE)
|
Arguments
bam |
Filenames of BAM-files to be opened. |
idx |
Optional: Name of BAM-index files |
rebuild |
Optional: Logical value.
When |
Author(s)
Wolfgang Kaisers
Examples
1 2 | bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
createIdxBatch(bam)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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