relSim: Relative Simulator
Version 0.2-0

A set of tools to explore the behaviour statistics used for forensic DNA interpretation when close relatives are involved. The package also offers some useful tools for exploring other forensic DNA situations.

AuthorJames M. Curran
Date of publication2015-04-03 10:03:41
MaintainerJames M. Curran <j.curran@auckland.ac.nz>
LicenseGPL (>= 2)
Version0.2-0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("relSim")

Getting started

README.md

Popular man pages

calcFst: Caculate locus-wise and population Fst values
fbiCaucs: CODIS STR Loci allele frequency data
locusIBS: Identity by state at a locus
lrMix: Calculate locuswise likelihood ratios for two person...
lrSib: Likelihood Ratio / Kinship Index for full-siblings
lrSibDebug: Likelihood Ratio / Kinship Index for full-siblings
randomProfile: Generate a random DNA profile from a given set of allele...
See all...

All man pages Function index File listing

Man pages

blockSim: Perform relatives simulations using large memory blocks in C
breedFst: Breed a population with an approximate level of theta(Fst)
calcFst: Caculate locus-wise and population Fst values
checkFreqs: Make sure that the frequencies are such
errorRate: Returns the false positive or false negative rates for a set...
exclusionPower: Calculate the exclusion power of a multiplex by locus
fbiCaucs: CODIS STR Loci allele frequency data
fetchBMdata: Retrieve data from Budowle and Moretti (1999) from the web
IBS: Identity by state
locusIBS: Identity by state at a locus
lrMix: Calculate locuswise likelihood ratios for two person...
lrPC: Likelihood Ratio for Parent-Child / Paternity Index
lrSib: Likelihood Ratio / Kinship Index for full-siblings
lrSibDebug: Likelihood Ratio / Kinship Index for full-siblings
normalizeFreqs: Normalize frequencies to 1
print.population: Print summary details of a substructed population
print.profile: Print a DNA profile
randomChild: Generate a random child from a given DNA profile and a given...
randomPCPairs: Generate one or more random parent/child pairs from a given...
randomProfile: Generate a random DNA profile from a given set of allele...
randomProfilePairs: Generate one or more random DNA profile pairs from a given...
randomSample: Generate a random sample of related (or unrelated) pairs of...
randomSib: Generate a random sibling from a given DNA profile and a...
randomSibPairs: Generate one or more pairs of random siblings from a given...
readFreqs: Read in a file of allele frequencies
readResults: Read a simulation result set from file
sim: Perform the relatives simulation
toNexus: Export a population with substructure to a Nexus file
USCaucs: CODIS STR Loci allele frequency data

Functions

IBS Man page Source code Source code
Rmix Source code
USCaucs Man page
blockSim Man page Source code
blockStatCounts Source code
blockStats Source code
breed Source code
breedFst Man page Source code
calcFst Man page Source code Source code
checkFreqs Man page Source code
ep Man page Source code
errorRate Man page Source code
estimateQuantile Source code
exclusionPower Man page Source code
fbiCaucs Man page
fetchBMdata Man page Source code
locusIBS Man page Source code Source code
locusLRmix Source code
lrMix Man page Source code
lrPC Man page Source code Source code
lrSib Man page Source code Source code
lrSibDebug Man page Source code
maximizeLRPC Source code Source code
normalizeFreqs Man page Source code
print.population Man page Source code
print.profile Man page Source code
randomChild Man page Source code
randomChildren Source code
randomPCPairs Man page Source code
randomProfile Man page Source code
randomProfilePairs Man page Source code
randomProfiles Source code
randomSample Man page Source code
randomSib Man page Source code
randomSibPairs Man page Source code
randomSibs Source code
readFreqs Man page Source code
readResults Man page Source code
sim Man page Source code
toNexus Man page Source code

Files

src
src/calcFst.cpp
src/breed.cpp
src/relSim.cpp
src/RcppExports.cpp
NAMESPACE
data
data/USCaucs.rda
data/fbiCaucs.rda
R
R/randomProfile.R
R/randomChild.R
R/maximizeLRPC.R
R/lrSib.R
R/print.profile.R
R/normalizeFreqs.R
R/estimateQuantile.R
R/randomProfilePairs.R
R/randomSample.R
R/fetchBMdata.R
R/readFreqs.R
R/randomSibPairs.R
R/errorRate.R
R/toNexus.R
R/RcppExports.R
R/lrPC.R
R/checkFreqs.R
R/randomPCPairs.R
R/print.population.R
R/readResults.R
R/sim.R
R/locusIBS.R
R/breedFst.R
R/blockSim.R
R/calcFst.R
R/lrSibDebug.R
R/randomSib.R
R/IBS.R
R/lrMix.R
R/exclusionPower.R
README.md
MD5
DESCRIPTION
man
man/readFreqs.Rd
man/locusIBS.Rd
man/checkFreqs.Rd
man/print.profile.Rd
man/readResults.Rd
man/randomProfilePairs.Rd
man/lrMix.Rd
man/fetchBMdata.Rd
man/IBS.Rd
man/randomChild.Rd
man/randomSample.Rd
man/USCaucs.Rd
man/print.population.Rd
man/normalizeFreqs.Rd
man/randomProfile.Rd
man/randomPCPairs.Rd
man/lrPC.Rd
man/randomSibPairs.Rd
man/exclusionPower.Rd
man/lrSib.Rd
man/fbiCaucs.Rd
man/randomSib.Rd
man/breedFst.Rd
man/errorRate.Rd
man/blockSim.Rd
man/toNexus.Rd
man/calcFst.Rd
man/sim.Rd
man/lrSibDebug.Rd
relSim documentation built on May 19, 2017, 3:44 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

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