relSim: Relative Simulator

Share:

A set of tools to explore the behaviour statistics used for forensic DNA interpretation when close relatives are involved. The package also offers some useful tools for exploring other forensic DNA situations.

Author
James M. Curran
Date of publication
2015-04-03 10:03:41
Maintainer
James M. Curran <j.curran@auckland.ac.nz>
License
GPL (>= 2)
Version
0.2-0

View on CRAN

Man pages

blockSim
Perform relatives simulations using large memory blocks in C
breedFst
Breed a population with an approximate level of theta(Fst)
calcFst
Caculate locus-wise and population Fst values
checkFreqs
Make sure that the frequencies are such
errorRate
Returns the false positive or false negative rates for a set...
exclusionPower
Calculate the exclusion power of a multiplex by locus
fbiCaucs
CODIS STR Loci allele frequency data
fetchBMdata
Retrieve data from Budowle and Moretti (1999) from the web
IBS
Identity by state
locusIBS
Identity by state at a locus
lrMix
Calculate locuswise likelihood ratios for two person...
lrPC
Likelihood Ratio for Parent-Child / Paternity Index
lrSib
Likelihood Ratio / Kinship Index for full-siblings
lrSibDebug
Likelihood Ratio / Kinship Index for full-siblings
normalizeFreqs
Normalize frequencies to 1
print.population
Print summary details of a substructed population
print.profile
Print a DNA profile
randomChild
Generate a random child from a given DNA profile and a given...
randomPCPairs
Generate one or more random parent/child pairs from a given...
randomProfile
Generate a random DNA profile from a given set of allele...
randomProfilePairs
Generate one or more random DNA profile pairs from a given...
randomSample
Generate a random sample of related (or unrelated) pairs of...
randomSib
Generate a random sibling from a given DNA profile and a...
randomSibPairs
Generate one or more pairs of random siblings from a given...
readFreqs
Read in a file of allele frequencies
readResults
Read a simulation result set from file
sim
Perform the relatives simulation
toNexus
Export a population with substructure to a Nexus file
USCaucs
CODIS STR Loci allele frequency data

Files in this package

relSim
relSim/src
relSim/src/calcFst.cpp
relSim/src/breed.cpp
relSim/src/relSim.cpp
relSim/src/RcppExports.cpp
relSim/NAMESPACE
relSim/data
relSim/data/USCaucs.rda
relSim/data/fbiCaucs.rda
relSim/R
relSim/R/randomProfile.R
relSim/R/randomChild.R
relSim/R/maximizeLRPC.R
relSim/R/lrSib.R
relSim/R/print.profile.R
relSim/R/normalizeFreqs.R
relSim/R/estimateQuantile.R
relSim/R/randomProfilePairs.R
relSim/R/randomSample.R
relSim/R/fetchBMdata.R
relSim/R/readFreqs.R
relSim/R/randomSibPairs.R
relSim/R/errorRate.R
relSim/R/toNexus.R
relSim/R/RcppExports.R
relSim/R/lrPC.R
relSim/R/checkFreqs.R
relSim/R/randomPCPairs.R
relSim/R/print.population.R
relSim/R/readResults.R
relSim/R/sim.R
relSim/R/locusIBS.R
relSim/R/breedFst.R
relSim/R/blockSim.R
relSim/R/calcFst.R
relSim/R/lrSibDebug.R
relSim/R/randomSib.R
relSim/R/IBS.R
relSim/R/lrMix.R
relSim/R/exclusionPower.R
relSim/README.md
relSim/MD5
relSim/DESCRIPTION
relSim/man
relSim/man/readFreqs.Rd
relSim/man/locusIBS.Rd
relSim/man/checkFreqs.Rd
relSim/man/print.profile.Rd
relSim/man/readResults.Rd
relSim/man/randomProfilePairs.Rd
relSim/man/lrMix.Rd
relSim/man/fetchBMdata.Rd
relSim/man/IBS.Rd
relSim/man/randomChild.Rd
relSim/man/randomSample.Rd
relSim/man/USCaucs.Rd
relSim/man/print.population.Rd
relSim/man/normalizeFreqs.Rd
relSim/man/randomProfile.Rd
relSim/man/randomPCPairs.Rd
relSim/man/lrPC.Rd
relSim/man/randomSibPairs.Rd
relSim/man/exclusionPower.Rd
relSim/man/lrSib.Rd
relSim/man/fbiCaucs.Rd
relSim/man/randomSib.Rd
relSim/man/breedFst.Rd
relSim/man/errorRate.Rd
relSim/man/blockSim.Rd
relSim/man/toNexus.Rd
relSim/man/calcFst.Rd
relSim/man/sim.Rd
relSim/man/lrSibDebug.Rd