Man pages for rmRNAseq
RNA-Seq Analysis for Repeated-Measures Data
| covset | Covariate Set Associated with RFI RNA-seq |
| dat | RFI RNA-seq Data |
| DESeq2Fit | Analysis of LPS RFI RNA-seq data Using DESeq2 |
| design | Reparameterized Design Matrix |
| edgeRFit | Analysis of the RFI RNA-seq data Using edgeR |
| estimate.m0 | Estimate Number of True Null Hypotheses Using Histogram-based... |
| glsCAR1 | Fit General Linear Model with 'corCAR1' Correlation Structure... |
| glsCAR1_loglik | Calculate REML Log-Likelihood of glsCAR1 model for each gene |
| glsSymm | Fit General Linear Model with 'corSymm' Correlation Structure... |
| jabes.q | Q-value Using Histogram-based Method |
| my_splineDiffExprs | Differential expression analysis based on natural cubic... |
| myvoom | myvoom function |
| NewTimeEst | Estimate New Time Points |
| pauc_out | Evaluation of Differential Expression Analysis Methods |
| res | Data Containing Results of Our Proposed Method Applying to... |
| resSymm | Data Containing results when analyzing RFI using TC_Symm |
| sc_CAR1 | Simulating Count Data From The Output of Real Data Analysis |
| sc_Symm | Simulating Count Data From The Output of Real Data Analysis... |
| shrink.phi | Shrinkaged Estimates of Error Variance |
| TC_CAR1 | RNA-seq Analysis for Repeated-measures Data |
| TC_CAR1_sc | A Wrap Function to analyze a Simulated Data - All Cases |
| teststat | Calculating F-Type Statistics To Test a General Linear... |
| TimeMin | Identify Time Points Mapping to 0 and 1 |
| varbeta | Recovering a Symmetric Matrix from Its Lower Triangular... |
| voomgls_CAR1 | General Linear Model Using Voom Output |
| voomgls_Symm | General Linear Model Using Voom Output corSymm correlction... |
| voomlimmaFit | Analysis of RFI RNA-seq data Using voom |
