Description Usage Arguments Value Examples
This function analyzes the LPS RFI RNA-seq data and simulated datasets using
DESeq
, the Quasi-likelihood F-test in DESeq2
package.
1 |
counts |
a matrix of count data. |
design |
a design matrix. |
Effect |
the effect used to simulate data, either line2, or time. This effect is considered as the main factor of interest where the status of DE and EE genes was specified. @param covset a data frame contain covariate set. |
a list of 4 components
fit |
output of |
pv |
a vector of p-values of the test for significant of |
qv |
a vector of q-values corresponding to the |
1 2 3 4 5 6 7 |
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