Description Usage Arguments Value
This function modifies the original voom
function
to obtain the fitted function f of the lowess fit.
1 2 3 |
counts |
a numeric |
design |
design matrix with rows corresponding to samples and columns to coefficients to be estimated. Defaults to the unit vector meaning that samples are treated as replicates. |
lib.size |
numeric vector containing total library sizes for each sample.
Defaults to the normalized (effective) library sizes in |
normalize.method |
the microarray-style normalization method to be applied to the logCPM values (if any).
Choices are as for the |
span |
width of the lowess smoothing window as a proportion. |
plot |
logical, should a plot of the mean-variance trend be displayed? |
save.plot |
logical, should the coordinates and line of the plot be saved in the output? |
... |
other arguments are passed to |
the same output as voom
plus the fitted function f
of the lowess fit of the link[limma]{voom}
method.
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