design: Reparameterized Design Matrix

In rmRNAseq: RNA-Seq Analysis for Repeated-Measures Data

Description

This is a reparameterized matrix from the original design matrix that includes time, line, time x line such that each column of the reparameterized design matrix corresponds to a test of interest such as line main effect, time2 - time0, time6 - time0, time24 - time0, and interaction effect of timei - time0 with line. When using this reparameterized design matrix in the analysis, for example, regression coefficients corresponding to its second column (line2) represents the Line main effect.

Usage

design

Format

A design matrix with 8 columns Intercept, line2, time2, time6, time24, linetime2, linetime6, linetime24.

Examples

data(design)
colnames(design)
head(design)

rmRNAseq documentation built on Nov. 8, 2019, 5:06 p.m.