landscape.exp.het: Calculate expected heterozygosity
In rmetasim: An Individual-Based Population Genetic Simulation Environment
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Calculate expected heterozygosity from a landscape
Usage
1
landscape.exp.het(Rland)
Arguments
Rland
the Rmetasim landscape object
Details
Calculates the expected heterozygosity in each population:
1 - sum(p^2)
where p is a vector of allele frequencies for a locus in a population.
Value
A matrix with num loci columns and num populations rows. Each element
reflects the expected heterozygosity for that population x locus combination
See Also
landscape.obs.het, Fst.landscape
Examples
1
2
3
4
exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
exphet <- landscape.exp.het(exampleland)
rm(exampleland)
rmetasim documentation built on Feb. 8, 2020, 1:06 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
Calculate expected heterozygosity from a landscape
Usage
1 | landscape.exp.het(Rland)
|
Arguments
Rland |
the Rmetasim landscape object |
Details
Calculates the expected heterozygosity in each population:
1 - sum(p^2)
where p is a vector of allele frequencies for a locus in a population.
Value
A matrix with num loci columns and num populations rows. Each element reflects the expected heterozygosity for that population x locus combination
See Also
landscape.obs.het, Fst.landscape
Examples
1 2 3 4 | exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
exphet <- landscape.exp.het(exampleland)
rm(exampleland)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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