landscape.simulate: Run a simulation for a single landscape through time

In rmetasim: An Individual-Based Population Genetic Simulation Environment

Description

Simulate a Rmetasim landscape for a number of generations.

Usage

   landscape.simulate(Rland,numit,seed=-1,compress=FALSE,adj.lambda=0, force=FALSE)

Arguments

Rland	the Rmetasim landscape object
numit	the number of generations/iterations to simulate, note that landscapes will not run past the rland$intparam$totalgens value
seed	The default value of seed uses the seed set in the calling environment. Any other value for seed uses 'set.seed()' to reset the random number generator. landscape.simulate uses the RNG selected by the calling environment.
compress	If true, landscape.simulate executes a survival and carrying capacity step before returning. In demographies with high reproductive potential, this can significantly reduce the size of R objects returned
adj.lambda	Tries to apply a correction to population growth that makes the observed growth rate more closely approximate that predicted from standard analysis eigensystem of the sum of the survival and reproduction Lefkovitch matrices
force	Tries to simulate a landscape even if it fails the 'is.landscape' test. Do not set to TRUE unless you reall know what you are doing

Examples

  exampleland <- landscape.new.example()
  exampleland <- landscape.simulate(exampleland, 4)
  exampleland
  rm(exampleland)

rmetasim documentation built on Feb. 8, 2020, 1:06 a.m.