landscape.new.intparam: Create a set of integer parameters

In rmetasim: An Individual-Based Population Genetic Simulation Environment

Description

Create a set of integer parameters for a Rmetasim landscape.

Usage

  ## must be called AFTER landscape.new.empty()
   landscape.new.intparam(rland,h=1,s=1,cg=0,ce=0,totgen=1000,
                          maxland=200000,xdim=0,ydim=0)

Arguments

rland	skeletion of landscape object, required
h	habitats (default=1), the number of different subpopulations within the landscape
s	stages (default=1), the number of stages in the life cycle of the organism
cg	currentgen (default=0), the current generation the simulation has reached
ce	currentepoch (default=0), the current epoch the simulation has reached
totgen	totoalgens (default=1000), the total number of generations to simulate
maxland	maxlandsize(default=200000), the maxium number of individuals that can exist in the simulation. Keeps large simulation from crashing computer
xdim	if habitats are arrayed in rectangle, number of x grid cells
ydim	if habitats are arrayed in rectangle, number of x grid cells

Examples

  ## Defaults
  exampleland <- landscape.new.empty()
  exampleland <- landscape.new.intparam(exampleland)
  exampleland$intparam

  ## 2 habitats, 3 stage lifecycle, 1000000 generations, maximum 1000000 individuals
  exampleland <- landscape.new.empty()
  exampleland <- landscape.new.intparam(exampleland,h=2,s=2,totgen=1000000,maxland=1000000)
  exampleland$intparam

  rm(exampleland)

rmetasim documentation built on Feb. 8, 2020, 1:06 a.m.