Calculate theta using heterozygosity
landscape.theta.k: Calculate theta using the number of alleles
In rmetasim: An Individual-Based Population Genetic Simulation Environment
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/pegas_interface.R
Description
Calculate theta using number of alleles from a landscape.
Usage
1
landscape.theta.k(rland)
Arguments
rland
the Rmetasim landscape object
Details
Uses routines in the package 'ape'
Value
A matrix with num loci columns and num populations rows. Each element
reflects the estimated theta for that population x locus combination
See Also
landscape.theta.h, landscape.theta.s
Examples
1
2
3
4
5
exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
theta.k.mat <- landscape.theta.k(exampleland)
theta.k.mat
rmetasim documentation built on May 30, 2017, 2:20 a.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/pegas_interface.R
Description
Calculate theta using number of alleles from a landscape.
Usage
1 | landscape.theta.k(rland)
|
Arguments
rland |
the Rmetasim landscape object |
Details
Uses routines in the package 'ape'
Value
A matrix with num loci columns and num populations rows. Each element reflects the estimated theta for that population x locus combination
See Also
landscape.theta.h, landscape.theta.s
Examples
1 2 3 4 5 | exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
theta.k.mat <- landscape.theta.k(exampleland)
theta.k.mat
|
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