landscape.theta.k: Calculate theta using the number of alleles
In rmetasim: An Individual-Based Population Genetic Simulation Environment
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/pegas_interface.R
Description
Calculate theta using number of alleles from a landscape.
Usage
1
landscape.theta.k(rland)
Arguments
rland
the Rmetasim landscape object
Details
Uses routines in the package 'ape'
Value
A matrix with num loci columns and num populations rows. Each element
reflects the estimated theta for that population x locus combination
See Also
landscape.theta.h, landscape.theta.s
Examples
1
2
3
4
5
exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
theta.k.mat <- landscape.theta.k(exampleland)
theta.k.mat
Example output
[,1] [,2] [,3]
[1,] 1.0468790 0.4391999 1.29517
[2,] 0.9062843 0.4942971 1.46612
rmetasim documentation built on Feb. 16, 2018, 1:01 a.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/pegas_interface.R
Description
Calculate theta using number of alleles from a landscape.
Usage
1 | landscape.theta.k(rland)
|
Arguments
rland |
the Rmetasim landscape object |
Details
Uses routines in the package 'ape'
Value
A matrix with num loci columns and num populations rows. Each element reflects the estimated theta for that population x locus combination
See Also
landscape.theta.h, landscape.theta.s
Examples
1 2 3 4 5 | exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
theta.k.mat <- landscape.theta.k(exampleland)
theta.k.mat
|
Example output
[,1] [,2] [,3]
[1,] 1.0468790 0.4391999 1.29517
[2,] 0.9062843 0.4942971 1.46612
rmetasim documentation built on Feb. 16, 2018, 1:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
As an Amazon Associate I earn from qualifying purchases.
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