Description Usage Arguments Details Value See Also Examples
return a matrix containing the states of the alleles in genotypes for a particular locus
1 | landscape.states(Rland,lnum=1)
|
lnum |
the locus to return |
Rland |
the Rmetasim landscape object |
Returns a matrix with rows = dim(rland$individuals)[1]
. The
columns 1:landscape.democol() correspond to demographic variables for an individual. The columns are: state, placeholder, birthyear, id, mother's id, and father's id. Here rland is a
landscape object. The remaining columns (1 if haploid, 2 if
diploid) contain the states of the alleles for the selected loci
matrix
landscape.locus
1 2 3 4 5 | exampleland <- landscape.new.example()
exampleland <- landscape.simulate(exampleland, 4)
print("Allele frequencies at locus 1")
table(landscape.states(exampleland,1)[,c(-1:-landscape.democol())])
rm(exampleland)
|
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