add_combo_levels: Add Combination Levels to split

In rtables: Reporting Tables

Add Combination Levels to split

Description

Add Combination Levels to split

Usage

select_all_levels

add_combo_levels(combosdf, trim = FALSE, first = FALSE, keep_levels = NULL)

Arguments

combosdf	data.frame/tbl_df. Columns valname, label, levelcombo, exargs. Of which levelcombo and exargs are list columns. Passing the select_all_levels object as a value in the comblevels column indicates that an overall/all-observations level should be created.
trim	logical(1). Should splits corresponding with 0 observations be kept when tabulating.
first	logical(1). Should the created split level be placed first in the levels (TRUE) or last (FALSE, the default).
keep_levels	character or NULL. If non-NULL, the levels to retain across both combination and individual levels.

Format

An object of class AllLevelsSentinel of length 0.

Value

a closure suitable for use as a splitting function (splfun) when creating a table layout

Note

Analysis or summary functions for which the order matters should never be used within the tabulation framework.

Examples

library(tibble)
combodf <- tribble(
    ~valname, ~label, ~levelcombo, ~exargs,
    "A_B", "Arms A+B", c("A: Drug X", "B: Placebo"), list(),
    "A_C", "Arms A+C", c("A: Drug X", "C: Combination"), list())

lyt <- basic_table(show_colcounts = TRUE) %>%
    split_cols_by("ARM", split_fun = add_combo_levels(combodf)) %>%
    analyze("AGE")

tbl <- build_table(lyt, DM)
tbl

lyt1 <- basic_table(show_colcounts = TRUE) %>%
    split_cols_by("ARM",
                  split_fun = add_combo_levels(combodf,
                                               keep_levels = c("A_B",
                                                               "A_C"))) %>%
    analyze("AGE")

tbl1 <- build_table(lyt1, DM)
tbl1

smallerDM <- droplevels(subset(DM, SEX %in% c("M", "F") &
                        grepl("^(A|B)", ARM)))
lyt2 <- basic_table(show_colcounts = TRUE) %>%
    split_cols_by("ARM", split_fun = add_combo_levels(combodf[1,])) %>%
    split_cols_by("SEX",
                  split_fun = add_overall_level("SEX_ALL", "All Genders")) %>%
    analyze("AGE")

lyt3 <-  basic_table(show_colcounts = TRUE) %>%
    split_cols_by("ARM", split_fun = add_combo_levels(combodf)) %>%
    split_rows_by("SEX",
                  split_fun = add_overall_level("SEX_ALL", "All Genders")) %>%
    summarize_row_groups() %>%
    analyze("AGE")

tbl3 <- build_table(lyt3, smallerDM)
tbl3

rtables documentation built on Aug. 30, 2023, 5:07 p.m.