Files in rwty

R We There Yet? Visualizing MCMC Convergence in Phylogenetics

README.md R/topological.approx.ess.R R/slide.freq.R R/cumulative.freq.R R/makeplot.all.params.R R/makeplot.asdsf.R R/combine.ptables.R R/check.chains.R R/topological.pseudo.ess.R R/makeplot.splitfreq.matrix.R R/makeplot.pseudo.ess.R R/makeplot.treespace.R R/treespace.R R/makeplot.pairs.R R/parse.clades.R R/makeplot.autocorr.R R/tree.dist.matrix.R R/fungus.R R/makeplot.splitfreqs.sliding.R R/parse.slide.clades.R R/makeplot.acsf.cumulative.R R/clade.freq.R R/makeplot.topology.R R/makeplot.param.R R/salamanders.R R/load.trees.R R/load.multi.R R/makeplot.acsf.sliding.R R/print.rwty.chain.R R/estimate.autocorr.m.R R/topological.autocorr.R R/analyze.rwty.R R/makeplot.splitfreqs.cumulative.R inst/report.template.Rmd tests/testthat.R tests/testthat/test_rwty.R man/combine.ptables.Rd man/makeplot.topology.Rd man/parse.clades.Rd man/makeplot.treespace.Rd man/analyze.rwty.Rd man/load.trees.Rd man/makeplot.asdsf.Rd man/fungus.Rd man/print.rwty.chain.Rd man/parse.slide.clades.Rd man/makeplot.splitfreqs.cumulative.Rd man/slide.freq.Rd man/load.multi.Rd man/makeplot.param.Rd man/treespace.Rd man/topological.autocorr.Rd man/makeplot.pseudo.ess.Rd man/clade.freq.Rd man/salamanders.Rd man/makeplot.splitfreqs.sliding.Rd man/cumulative.freq.Rd man/makeplot.splitfreq.matrix.Rd man/makeplot.autocorr.Rd man/tree.dist.matrix.Rd man/makeplot.acsf.cumulative.Rd man/makeplot.acsf.sliding.Rd man/topological.pseudo.ess.Rd man/topological.approx.ess.Rd man/makeplot.all.params.Rd man/estimate.autocorr.m.Rd man/makeplot.pairs.Rd man/check.chains.Rd