Man pages for sccca
Single-Cell Correlation Based Cell Type Annotation
| calculate_cor_mat | Performs aggregation based on cell clusters and condition.... |
| calculate_normalized_ratio | Calculate cell scores based on number of genes |
| correct_gene_symbols | Process the cell markers names |
| enrich_genes | Performs parallel function on two lists |
| filter_correlation | Filter the genes based on specific correlation threshold |
| filter_list | Process the cell markers that overlap between the cell... |
| fisher_test | Performs fisher exact test to get the significant overlap... |
| match_characters | Process the cell markers that pass specific threshold in the... |
| phyper_test | Performs phyper test to get the significant overlap between... |
| process_clus | Gets the associated cell types using correlation-based... |
| process_database | Process the database for the sctype approach |
| process_markers | Process the cell markers database and return the processed... |
| sccca | Run the pipeline for the cell type assignment |
| sctype | Run the sctype approach as it's implemented by Ianevski, A.,... |
