calculate_cor_mat | R Documentation |
This Function is used to perform cell aggregation by averaging the expression of scRNA-seq matrix and then perform correlation matrix
calculate_cor_mat(expression_mat, condition = NULL, clusters, assay = "RNA")
expression_mat |
Seurat object that contains the expression matrix. |
condition |
column name of the condition in th meta data of the Seurat object. |
clusters |
column name of the cluster numbers in the meta data of the Seurat object. |
assay |
the assay to be used default is set to RNA |
correlation matrix of genes.
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
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