filter_correlation: Filter the genes based on specific correlation threshold
In sccca: Single-Cell Correlation Based Cell Type Annotation
filter_correlation R Documentation
Filter the genes based on specific correlation threshold
Description
This Function is used to filter the gene correlation matrix based on user-defined threshold
Usage
filter_correlation(cor_mat, gene_list, threshold = 0.7)
Arguments
cor_mat
correlation matrix generated from calculate_cor_mat function.
gene_list
cell markers that passed threshold.
threshold
absolute correlation threshold.
Value
vector of gene names that pass user-defined correlation threshold.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
sccca documentation built on May 29, 2024, 2:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| filter_correlation | R Documentation |
Filter the genes based on specific correlation threshold
Description
This Function is used to filter the gene correlation matrix based on user-defined threshold
Usage
filter_correlation(cor_mat, gene_list, threshold = 0.7)
Arguments
cor_mat |
correlation matrix generated from calculate_cor_mat function. |
gene_list |
cell markers that passed threshold. |
threshold |
absolute correlation threshold. |
Value
vector of gene names that pass user-defined correlation threshold.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.