process_database: Process the database for the sctype approach

In sccca: Single-Cell Correlation Based Cell Type Annotation

Process the database for the sctype approach

Description

This Function is used to process the database that will be used for sctype approach

Usage

process_database(database_name = "sctype", org = 'a', tissue, tissue_type = 'n')

Arguments

database_name	name of the database to be used that can be 'sctype' or 'UMD'.
org	name of organism to be used that can be 'h' for human, 'm' for mouse, and 'a' for all markers.
tissue	specified tissue from which the data comes.
tissue_type	tissue type whether 'a' for all types 'n' for normal tissues only or "c" for cancer tissues.

Value

vector of genes names which overlap with the correlation matrix.

Author(s)

Mohmed Soudy [e-mail] and Sohpie LE BARS [e-mail] and Enrico Glaab [e-mail]

sccca documentation built on May 29, 2024, 2:22 a.m.