phyper_test: Performs phyper test to get the significant overlap between...
In sccca: Single-Cell Correlation Based Cell Type Annotation
phyper_test R Documentation
Performs phyper test to get the significant overlap between genes for cell type assignment
Description
This Function is used to perform phyper test to get cell types
Usage
phyper_test(ref, overlap)
Arguments
ref
reference gene set.
overlap
genes that pass the correlation threshold.
Value
vector of p-value and overlap.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
Examples
phyper_test(c("PAX8","PAX6","TP53","AOC3","LIPF"), c("LIPF","PAX8","PAX6","TP53","TSHB","AOC3"))
sccca documentation built on May 29, 2024, 2:22 a.m.
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| phyper_test | R Documentation |
Performs phyper test to get the significant overlap between genes for cell type assignment
Description
This Function is used to perform phyper test to get cell types
Usage
phyper_test(ref, overlap)
Arguments
ref |
reference gene set. |
overlap |
genes that pass the correlation threshold. |
Value
vector of p-value and overlap.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
Examples
phyper_test(c("PAX8","PAX6","TP53","AOC3","LIPF"), c("LIPF","PAX8","PAX6","TP53","TSHB","AOC3"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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