fisher_test: Performs fisher exact test to get the significant overlap...
In sccca: Single-Cell Correlation Based Cell Type Annotation
fisher_test R Documentation
Performs fisher exact test to get the significant overlap between genes for cell type assignment
Description
This Function is used to perform fisher exact test to get cell types
Usage
fisher_test(ref, gene_overlap)
Arguments
ref
reference gene set.
gene_overlap
genes that pass the correlation threshold.
Value
vector of p-value and overlap.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
Examples
fisher_test(c("PAX8","PAX6","TP53","AOC3","LIPF"), c("LIPF","PAX8","PAX6","TP53","TSHB","AOC3"))
sccca documentation built on May 29, 2024, 2:22 a.m.
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| fisher_test | R Documentation |
Performs fisher exact test to get the significant overlap between genes for cell type assignment
Description
This Function is used to perform fisher exact test to get cell types
Usage
fisher_test(ref, gene_overlap)
Arguments
ref |
reference gene set. |
gene_overlap |
genes that pass the correlation threshold. |
Value
vector of p-value and overlap.
Author(s)
Mohmed Soudy Mohamed.soudy@uni.lu and Sohpie LE BARS sophie.lebars@uni.lu and Enrico Glaab enrico.glaab@uni.lu
Examples
fisher_test(c("PAX8","PAX6","TP53","AOC3","LIPF"), c("LIPF","PAX8","PAX6","TP53","TSHB","AOC3"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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