Man pages for scfetch
Access and Format Single-Cell RNA-Seq Datasets from Public Resources
| Bam2Fastq | Convert bam files to fastq files. |
| DownloadBam | Download bam. |
| DownloadSRA | Download SRA. |
| ExportSeurat | Export SeuratObject to Other Formats. |
| ExtractCBComposition | Extract Cell Type Composition of UCSC Cell Browser Datasets. |
| ExtractCBDatasets | Extract UCSC Cell Browser Datasets with Attributes. |
| ExtractCELLxGENEMeta | Extract Metadata of CELLxGENE Datasets with Attributes. |
| ExtractGEOExp | Extract Raw Count Matrix or Fortmat Supplementary Files to... |
| ExtractGEOExpSupp | Extract Raw Count Matrix from Supplementary Files. |
| ExtractGEOExpSupp10x | Fortmat Supplementary Files to 10x. |
| ExtractGEOExpSuppAll | Extract Raw Count Matrix from Supplementary Files or Fortmat... |
| ExtractGEOInfo | Extract GEO Study Information. |
| ExtractGEOMeta | Extract Sample Metadata from GEO. |
| ExtractGEOSubMeta | Extract Sample Metadata. |
| ExtractHCAMeta | Extract Metadata of Human Cell Atlas Projects with... |
| ExtractPanglaoDBComposition | Extract Cell Type Composition of PanglaoDB Datasets. |
| ExtractPanglaoDBMeta | Extract Metadata of scRNA-seq Datasets in PanglaoDB. |
| ExtractRun | Extract Runs with GEO Accession Number or GSM Number. |
| ExtractZenodoMeta | Prepare Dataframe with Zenodo DOIs. |
| ImportSeurat | Convert Other Formats to SeuratObject. |
| PanglaoDBComposition | All Sample Composition of PanglaoDB Datasets |
| PanglaoDBMeta | All Sample Metadata of PanglaoDB Datasets |
| ParseCBDatasets | Download UCSC Cell Browser Datasets. |
| ParseCELLxGENE | Download CELLxGENE Datasets. |
| ParseGEO | Download Matrix from GEO and Load to Seurat. |
| ParseHCA | Download Human Cell Atlas Datasets. |
| ParsePanglaoDB | Parse PanglaoDB Data. |
| ParseZenodo | Download Data with Zenodo DOI. |
| SCEAnnData | Data Format Conversion between SingleCellExperiment and... |
| SCELoom | Data Format Conversion between SingleCellExperiment and loom. |
| ShowCBDatasets | Show All Available Datasets in UCSC Cell Browser. |
| ShowCELLxGENEDatasets | Show All Available Datasets in CELLxGENE. |
| ShowHCAProjects | Show All Available Projects in Human Cell Atlas. |
| SplitSRA | Split SRA to fastq Files and Format to 10x Standard Style. |
| StatDBAttribute | Stat Database Attributes. |
