ShowCBDatasets: Show All Available Datasets in UCSC Cell Browser.

In scfetch: Access and Format Single-Cell RNA-Seq Datasets from Public Resources

Show All Available Datasets in UCSC Cell Browser.

Description

Show All Available Datasets in UCSC Cell Browser.

Usage

ShowCBDatasets(lazy = TRUE, json.folder = NULL, update = FALSE, quiet = FALSE)

Arguments

lazy	Logical value, whether to always load datasets online or locally. Default: TRUE (load locally).
json.folder	Folder used to save or load datasets json files. Default: NULL (current working directory).
update	Logical value, whther to update local datasets json. Default: FALSE. For the first time, you should set lazy TRUE and update TRUE to save json files.
quiet	Logical value, whether to show downloading progress. Default: FALSE (show).

Value

Dataframe contains all available datasets.

Examples

## Not run: 
# first time run (lazy mode), need users to provide json folder
ucsc.cb.samples <- ShowCBDatasets(lazy = TRUE, update = TRUE)
# second time run (lazy mode), need users to provide json folder
ucsc.cb.samples <- ShowCBDatasets(lazy = TRUE, update = FALSE)

## End(Not run)

scfetch documentation built on Nov. 22, 2023, 1:09 a.m.