ExtractGEOMeta: Extract Sample Metadata from GEO.
In scfetch: Access and Format Single-Cell RNA-Seq Datasets from Public Resources
ExtractGEOMeta R Documentation
Extract Sample Metadata from GEO.
Description
Extract Sample Metadata from GEO.
Usage
ExtractGEOMeta(acce, platform = NULL, ...)
Arguments
acce
GEO accession number.
platform
Platform information/field. Default: NULL (all platforms).
...
Parameters for getGEO.
Value
Dataframe contains all metadata of provided GEO accession number.
Examples
# users may need to set the size of the connection buffer
# Sys.setenv("VROOM_CONNECTION_SIZE" = 131072 * 60)
# extract metadata of specified platform
GSE200257.meta <- ExtractGEOMeta(acce = "GSE200257", platform = "GPL24676")
scfetch documentation built on Nov. 22, 2023, 1:09 a.m.
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| ExtractGEOMeta | R Documentation |
Extract Sample Metadata from GEO.
Description
Extract Sample Metadata from GEO.
Usage
ExtractGEOMeta(acce, platform = NULL, ...)
Arguments
acce |
GEO accession number. |
platform |
Platform information/field. Default: NULL (all platforms). |
... |
Parameters for |
Value
Dataframe contains all metadata of provided GEO accession number.
Examples
# users may need to set the size of the connection buffer
# Sys.setenv("VROOM_CONNECTION_SIZE" = 131072 * 60)
# extract metadata of specified platform
GSE200257.meta <- ExtractGEOMeta(acce = "GSE200257", platform = "GPL24676")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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