ParseZenodo: Download Data with Zenodo DOI.

In scfetch: Access and Format Single-Cell RNA-Seq Datasets from Public Resources

Download Data with Zenodo DOI.

Description

Download Data with Zenodo DOI.

Usage

ParseZenodo(
  doi = NULL,
  file.ext = c("rdata", "rds", "h5ad"),
  doi.df = NULL,
  out.folder = NULL,
  timeout = 1000,
  quiet = FALSE,
  parallel = TRUE
)

Arguments

doi	A vector of Zenodo DOIs to download. Default: NULL.
file.ext	The valid file extension for download. When NULL, use all files. Default: c("rdata", "rds", "h5ad").
doi.df	DOI dataframe for download. This is useful when something wrong happens in downloading (e.g. MD5 verification failure, DownloadZenodo will return a dataframe contains failure terms.). Default: NULL. It is required to provide either doi or doi.df.
out.folder	The output folder. Default: NULL (current working directory).
timeout	Maximum request time. Default: 1000.
quiet	Logical value, whether to show downloading progress. Default: FALSE (show).
parallel	Logical value, whether to download parallelly. Default: TRUE. When "libcurl" is available for download.file, the parallel is done by default (parallel can be FALSE).

Value

When successful, NULL. When MD5 verification failure, a dataframe contains failure terms.

Examples

## Not run: 
# need users to provide the output folder
multi.dois.parse <- ParseZenodo(
  doi = c(
    "1111", "10.5281/zenodo.7243603",
    "10.5281/zenodo.7244441"
  ),
  file.ext = c("rdata", "rds"),
  out.folder = "/path/to/outfoder"
)

## End(Not run)

scfetch documentation built on Nov. 22, 2023, 1:09 a.m.