ExtractRun: Extract Runs with GEO Accession Number or GSM Number.

In scfetch: Access and Format Single-Cell RNA-Seq Datasets from Public Resources

Extract Runs with GEO Accession Number or GSM Number.

Description

Extract Runs with GEO Accession Number or GSM Number.

Usage

ExtractRun(gsm = NULL, acce = NULL, platform = NULL, parallel = TRUE, ...)

Arguments

gsm	GSM number. Default: NULL (use acce).
acce	GEO accession number. Default: NULL (use gsm). acce and gsm cannot be both NULL.
platform	Platform information/field. Default: NULL (all platforms).
parallel	Logical value, whether to process GSM parallelly. Default: TRUE.
...	Parameters for getGEO. Used when acce is not NULL.

Value

Dataframe contains GSM and Runs.

Examples

## Not run: 
GSE186003.runs <- ExtractRun(acce = "GSE186003", platform = "GPL24247", parallel = FALSE)

## End(Not run)

scfetch documentation built on Nov. 22, 2023, 1:09 a.m.