sdm
Species Distribution Modelling

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Functions
380
Source code
71
Man pages
35
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sdm: Species Distribution Modelling
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API

API for sdm
Species Distribution Modelling

Global functions
+,sdmModels,sdmModels-method Man page
.Ensemble_Method Source code
.Extract Source code
.Jackard Source code
.LD Source code
.LD2 Source code
.Lapply Source code
._getPerformance Source code
._varImp Source code
.addLHSformula Source code
.addMethods Source code
.agrep Source code
.auc Source code
.bin Source code
.bioclimDismo Source code
.bioclimFit Source code
.boyce Source code
.canProcessInMemory Source code
.cbi Source code
.char2time Source code
.charVector2List Source code
.checkFactor Source code
.cmx Source code
.colNumber Source code
.combineModels Source code
.combineSdmData Source code
.cor Source code
.create.sdmCorrelativeMethod Source code
.createSdmdata Source code
.cutx Source code
.dataClean Source code
.deleteRecords Source code
.detachPackage Source code
.deviance_binomial Source code
.deviance_gaussian Source code
.deviance_laplace Source code
.deviance_poisson Source code
.domClass Source code
.domainDismo Source code
.dummy Source code
.ensSetting Source code
.ent Source code
.eqFactLevel Source code
.eval Source code
.evalExpr Source code
.evaluate.binomial Source code
.evaluate.cmx Source code
.evaluate.numerical Source code
.exCoords Source code
.exFormula Source code
.exFunc Source code
.exGroup Source code
.exInfo Source code
.exInteraction Source code
.exPCA Source code
.exProduct Source code
.exScale Source code
.exTime Source code
.excludeVector Source code
.extractEvaluation Source code
.factorFreq Source code
.fcor Source code
.feLapply Source code
.fit Source code
.fitLapply Source code
.fitSimpleLapply Source code
.fit_and_1eval Source code
.fit_and_2evals_indep Source code
.fit_and_3evals Source code
.fitlapply Source code
.fixFormula Source code
.fuLapply Source code
.gauss Source code
.generateName Source code
.generateWL Source code
.generateWLP Source code
.getAOA Source code
.getCells Source code
.getData.sdmMatrix Source code
.getData.sdmY Source code
.getDataFrame Source code
.getDataParams Source code
.getEnsembleDF Source code
.getEnsembleR Source code
.getEnvSpace Source code
.getEnvSpace2 Source code
.getEvalTable Source code
.getEvalThresholds Source code
.getFeatFactor Source code
.getFeatFunc Source code
.getFeatHingeThreshold Source code
.getFeatLQCP Source code
.getFeature.cubic Source code
.getFeature.linear Source code
.getFeature.poly Source code
.getFeature.poly.Raster Source code
.getFeature.poly.SpatRaster Source code
.getFeature.product Source code
.getFeature.quad Source code
.getFeatureFrame Source code
.getFeatureGenerator Source code
.getFeatureRecords Source code
.getFeatureType Source code
.getFormula Source code
.getFormula.gammgcv Source code
.getFormula.gammgcv.rhs Source code
.getFormula.glmPoly Source code
.getFormula.rhs Source code
.getGroupIndex Source code
.getGroupLevels Source code
.getGroupNames Source code
.getHinge Source code
.getID_From_ModelNames Source code
.getIndex Source code
.getInteraction Source code
.getModel.info Source code
.getModel.info2 Source code
.getNeighCellRandom Source code
.getNicheRaster Source code
.getNicheSpatRaster Source code
.getPCAfunction Source code
.getPackageGitHubList Source code
.getPackageList Source code
.getRecordID Source code
.getRhsFromFormula Source code
.getRoc Source code
.getRunID Source code
.getRunTaskTable Source code
.getScaleFunction Source code
.getSdmDataFrame Source code
.getSpecies Source code
.getSpeciesDF Source code
.getSpeciesDistribution Source code
.getSpeciesIndex Source code
.getSpeciesNames Source code
.getSpeciesRecords Source code
.getThreshold Source code
.getTimeIndex Source code
.getTotal.object.size Source code
.getVarImpObject Source code
.getWeights Source code
.getlevels Source code
.gui.sdm Source code
.hinge Source code
.identicalContent Source code
.int.to.numeric Source code
.invhinge Source code
.is.Date Source code
.is.installed Source code
.is.windows Source code
.isBinomial Source code
.loadLib Source code
.mae Source code
.mahal Source code
.mahalDismo Source code
.maxNet Source code
.maxent Source code
.maxlike Source code
.methodFix Source code
.movEnv Source code
.movEnv2sdm Source code
.nested_terms Source code
.newFormulaFunction Source code
.newGroup Source code
.newMetadata Source code
.newMethod Source code
.newgroup Source code
.nicheSimilarity Source code
.nicheSimilarityP Source code
.nicheSimilarityV Source code
.nicheSpace Source code
.normalize Source code
.occurrence Source code
.onAttach Source code
.onUnload Source code
.parLapply Source code
.pcaObject-class Man page
.pkgLoad Source code
.plot.roc Source code
.pmatch Source code
.pmatch2 Source code
.pseudo.Raster Source code
.pseudo.terra Source code
.pseudo_eDist.Raster Source code
.pseudo_eDist.Terra Source code
.pseudo_eRandom.Raster Source code
.pseudo_eRandom.Terra Source code
.pseudo_gDist.Raster Source code
.pseudo_gDist.Terra Source code
.pseudo_gRandom.Raster Source code
.pseudo_gRandom.Terra Source code
.raster2df Source code
.removeSpace Source code
.replicate.methodFix Source code
.require Source code
.responseCurve Source code
.responseCurve1 Source code
.responseCurveEns Source code
.rmCoordsInFormula Source code
.rmse Source code
.roc Source code
.select.terms Source code
.selectData Source code
.speciesDetect Source code
.speciesType Source code
.split.formula Source code
.split.formula.for.select Source code
.statFix Source code
.subsetRecords Source code
.templateMatch Source code
.term Source code
.thresh Source code
.threshold Source code
.trim Source code
.update.sdmCorrelativeMethod Source code
.updateGroup Source code
.varExist Source code
.varImpEns Source code
.wellP Source code
.where Source code
.which.is.coords Source code
.wm Source code
Arith-methods Man page
CRSorNULL-class Man page
[,sdmdata,ANY,ANY-method Man page
[,sdmdata,missing,missing-method Man page
[[,sdmModels,ANY,ANY-method Man page
add Man page
add,list,character-method Man page
aoa Man page
aoa,SpatRaster,sdmModels-method Man page
aoa,SpatRaster,sdmdata-method Man page
as.data.frame Man page
as.data.frame,sdmdata-method Man page
background Man page
background,Raster-method Man page
background,SpatRaster-method Man page
boxplot Man page
boxplot,sdmEvaluate-method Man page
calibration Man page
calibration,sdmEvaluate,missing-method Man page
calibration,vector,vector-method Man page
characterORmissing-class Man page
characterORnull-class Man page
coords Man page
coords,sdmModels-method Man page
coords,sdmdata-method Man page
coords<- Man page
coords<-,sdmdata-method Man page
data.frameORmatrix-class Man page
data.frameORnull-class Man page
density Man page
density,sdmEvaluate-method Man page
ensemble Man page
ensemble,sdmModels,Raster-method Man page
ensemble,sdmModels,SpatRaster-method Man page
ensemble,sdmModels,data.frame-method Man page
ensemble,sdmModels-method Man page
environmentORnull-class Man page
evaluates Man page
evaluates,sdmModels,SpatRaster-method Man page
evaluates,sdmModels,missing-method Man page
evaluates,sdmdata,RasterLayer-method Man page
evaluates,sdmdata,SpatRaster-method Man page
evaluates,vector,vector-method Man page
expressionORnull-class Man page
featuresFrame-class Man page
formulaORnull-class Man page
functionORcharacter-class Man page
functionORnull-class Man page
getEvaluation Man page
getEvaluation,sdmModels-method Man page
getModelId Man page
getModelId,sdmModels-method Man page
getModelInfo Man page
getModelInfo,sdmModels-method Man page
getModelObject Man page
getModelObject,sdmModels-method Man page
getReplication Man page
getReplication,sdmModels-method Man page
getResponseCurve Man page
getResponseCurve,sdmModels-method Man page
getRoc Man page
getRoc,sdmModels,ANY-method Man page
getRoc,vector,vector-method Man page
getThreshold Man page
getThreshold,sdmModels,character-method Man page
getThreshold,sdmModels,numeric-method Man page
getVarImp Man page
getVarImp,sdmModels-method Man page
getmethod Man page
getmethod,character-method Man page
getmethodNames Man page
getmethodNames,ANY-method Man page
gui Man page
gui,sdmModels-method Man page
installAll Man page
installAll,ANY-method Man page
integerORnull-class Man page
listORcharacter-class Man page
listORnull-class Man page
matrixORnull-class Man page
names Man page
names,sdmdata-method Man page
names<- Man page
names<-,sdmdata-method Man page
niche Man page
niche,RasterStackBrick,RasterLayer-method Man page
niche,RasterStackBrick,SpatialPoints-method Man page
niche,RasterStackBrick,sdmdata-method Man page
niche,SpatRaster,SpatRaster-method Man page
niche,SpatRaster,SpatVector-method Man page
niche,SpatRaster,sdmdata-method Man page
niche,sdmdata,ANY-method Man page
nicheSimilarity Man page
nicheSimilarity,.nicheSpatRaster,.nicheSpatRaster-method Man page
nicheSimilarity,SpatRaster,SpatRaster-method Man page
nicheSimilarity,SpatRaster,missing-method Man page
numericORnull-class Man page
pa Man page
pa,SpatRaster,numeric-method Man page
pa,SpatRaster,sdmModels-method Man page
pa,SpatRaster,sdmdata-method Man page
pca Man page
pca,RasterStackBrick-method Man page
pca,SpatRaster-method Man page
pca,data.frame-method Man page
pca,sdmdata-method Man page
plot,.nicheRaster-method Man page
plot,.nicheSpatRaster-method Man page
plot,.responseCurve-method Man page
predict Man page
predict,.maxlikeModel-method Man page
predict,sdmModels-method Man page
princomp-class Man page
rcurve Man page
rcurve,.responseCurve-method Man page
rcurve,sdmModels-method Man page
read.sdm Man page
read.sdm,character-method Man page
roc Man page
roc,sdmModels,ANY-method Man page
roc,sdmModels-method Man page
roc,vector,vector-method Man page
sdm Man page
sdm,ANY,sdmdata,.sdmCorSetting-method Man page
sdm,ANY,sdmdata,character-method Man page
sdm,sdmdata,.sdmCorSetting,ANY-method Man page
sdmAdapt Man page
sdmAdapt,sdmModels-method Man page
sdmAdapt,sdmdata-method Man page
sdmCorrelativeMethod-class Man page
sdmData Man page
sdmData,ANY,SpatVector,SpatRaster-method Man page
sdmData,ANY,SpatialPoints,Raster-method Man page
sdmData,ANY,SpatialPoints,missing-method Man page
sdmData,ANY,data.frame,SpatRaster-method Man page
sdmData,ANY,data.frame,missing,missing-method Man page
sdmData,ANY,data.frame,missing-method Man page
sdmData,data.frame,formula,missing-method Man page
sdmData,data.frame,missing,missing-method Man page
sdmEvaluate-class Man page
sdmFormula-class Man page
sdmModels-class Man page
sdmSetting Man page
sdmSetting,ANY,sdmdata,character-method Man page
sdmdata-class Man page
show,sdmEvaluate-method Man page
show,sdmModels-method Man page
show,sdmSetting-method Man page
show,sdmdata-method Man page
subset Man page
subset,sdmModels-method Man page
threshold Man page
threshold,sdmModels,character-method Man page
threshold,sdmModels,numeric-method Man page
write.sdm Man page
write.sdm,.sdmCorSetting,character-method Man page
write.sdm,sdmModels,character-method Man page
write.sdm,sdmdata,character-method Man page
sdm documentation built on April 3, 2025, 6:20 p.m.

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