check_ae_aelat: Check if AESOC has Eye, and Affected Eye is missing

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check if AESOC has Eye, and Affected Eye is missing

Description

This check looks if AESOC has Eye, and AELAT is missing.

Usage

check_ae_aelat(AE, preproc = identity, ...)

Arguments

AE	Adverse Event Dataset for Ophtho Study with variables USUBJID, AELAT, AESOC, AEDECOD, AETERM, AESTDTC (if present), AESPID (if present)
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Monarch Shah (HackR 2021 Team Eye)

See Also

Other OPHTH: check_cm_cmlat_prior_ocular(), check_cm_cmlat(), check_oe_bcva_1m_late_early_tot(), check_oe_bcva_4m_late_early_tot(), check_oe_bcva_4m_vs_1m_req(), check_oe_bcva_tot_mismatch(), check_oe_sc_lat_count_fingers(), check_pr_prlat(), check_sc_dm_eligcrit(), check_sc_dm_seyeselc()

Examples

AE <- data.frame(
   USUBJID = 1:5,
   AESTDTC = 1:5,
   AELOC   = c("", "EYE", "eye", "", "EYE"),
   AELAT   = c("Left", "","left", "RIGHT", ""),
   AETERM  = c("A", "B", "A", "B", "A"),
   AEDECOD = c("A", "B", "A", "B", "A"),
   AESOC   = c("Eye", "Eye","Eye Disorder","Eye Disorder", "Eye"),
   AESPID  = "FORMNAME-R:19/L:19XXXX",
   stringsAsFactors = FALSE)

check_ae_aelat(AE)
check_ae_aelat(AE,preproc=roche_derive_rave_row)

AE <- data.frame(
   USUBJID = 1:5,
   AESTDTC = 1:5,
   AELAT   = c("Left", "","Bilateral", "", ""),
   AETERM  = c("A", "B", "A", "B", "A"),
   AEDECOD = c("A", "B", "A", "B", "A"),
   AESOC   = c("Eye", "Eye","Eye Disorder","Eye Disorder", "Eye"),
   stringsAsFactors = FALSE)

check_ae_aelat(AE)
check_ae_aelat(AE,preproc=roche_derive_rave_row)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.