check_ae_death: Check for Grade 5 AE death variable consistency

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check for Grade 5 AE death variable consistency

Description

Checks for grade 5 AEs not marked fatal (AEOUT), death not indicated (AESDTH), or no death date (AESDTHDTC)

Usage

check_ae_death(AE, preproc = identity, ...)

Arguments

AE	Adverse Event dataframe with variables USUBJID,AETOXGR,AEOUT,AEDTHDTC,AESDTH
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Iris Zhao

Examples

 AE <- data.frame(
 USUBJID = 1:10,
 AETOXGR = c(1:5,5,5,5,5,5),
 AEDTHDTC = c(rep(NA,4),rep("2020-01-01",6)),
 AESDTH = c(rep(NA,4),rep("Y",6)),
 AEOUT = c(rep(NA,4),rep("FATAL",6)),
  AESPID = "FORMNAME-R:13/L:13XXXX"
)

check_ae_death(AE)
check_ae_death(AE,preproc=roche_derive_rave_row)

AE$AEDTHDTC[5]="NA"
AE$AEDTHDTC[6]=NA
AE$AEDTHDTC[7]=""
AE$AESDTH[8]=NA
AE$AEOUT[9]=NA

check_ae_death(AE)
check_ae_death(AE,preproc=roche_derive_rave_row)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.