check_ae_ds_partial_death_dates: Check for partial death dates in AE and DS

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check for partial death dates in AE and DS

Description

This checks looks for partial death dates in AE and DS

Usage

check_ae_ds_partial_death_dates(AE, DS, preproc = identity, ...)

Arguments

AE	Adverse Events SDTM dataset with variables USUBJID,AEDTHDTC,AEDECOD
DS	Dispostion SDTM dataset with variables USUBJID,DSSCAT,DSSTDTC,DSDECOD
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Will Harris

Examples

# test with sample data

AE <- data.frame(
 USUBJID = 1:3,
 AEDECOD = c("AE1","AE2","AE3"),
 AEDTHDTC = c("2017-01-01","2017",NA),
 AESPID = "FORMNAME-R:2/L:2XXXX",
 stringsAsFactors=FALSE
)

DS <- data.frame(
 USUBJID = 1:4,
 DSSCAT = "STUDY DISCON",
 DSDECOD = "DEATH",
 DSSTDTC = c("2017-01-01","2017","2017-01-02","2016-10"),
 stringsAsFactors=FALSE
)

check_ae_ds_partial_death_dates(AE,DS)
check_ae_ds_partial_death_dates(AE,DS,preproc=roche_derive_rave_row)

DS$DSSTDTC = NULL

check_ae_ds_partial_death_dates(AE,DS)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.