check_cm_cmlat_prior_ocular: Check if ocular concomitant medication has laterality missing...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check if ocular concomitant medication has laterality missing for specific "PRIOR OCULAR THERAPIES AND TREATMENTS" (or similar names) CRF page.

Description

This check assesses ocular CMCAT records and flags records with missing/inconsistent laterality

Usage

check_cm_cmlat_prior_ocular(CM, preproc = identity, ...)

Arguments

CM	Concomitant Medications Dataset for Ophtha Study with variables USUBJID, CMCAT, CMLAT, CMTRT, CMSPID (if Present), CMSTDTC (if Present), CMLOC (if Present), CMINDC (if Present), CMDOSFRM (if Present)
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Tim Barnett (HackR 2021 Team Eye) (copied from check_cm_cmlat)

See Also

Other OPHTH: check_ae_aelat(), check_cm_cmlat(), check_oe_bcva_1m_late_early_tot(), check_oe_bcva_4m_late_early_tot(), check_oe_bcva_4m_vs_1m_req(), check_oe_bcva_tot_mismatch(), check_oe_sc_lat_count_fingers(), check_pr_prlat(), check_sc_dm_eligcrit(), check_sc_dm_seyeselc()

Examples

CM <- data.frame(
   USUBJID = 1:5,
   CMCAT = "PRIOR OCULAR THERAPIES AND TREATMENTS",
   CMSTDTC = 1:5,
   CMLAT   = c("Left", "","Bilateral", "", ""),
   CMTRT   = c("A", "B", "A", "B", "A"),
   CMDECOD = c("A", "B", "A", "B", "A"),
   CMROUTE = c("","OPHTHALMIC","INTRAVITREAL","INTRAVITREAL", "opHTHALMIC"),
   CMSPID  = "FORMNAME-R:13/L:13XXXX",
   stringsAsFactors = FALSE)
check_cm_cmlat_prior_ocular(CM,preproc=roche_derive_rave_row)

CM <- data.frame(
   USUBJID = 1:5,
   CMCAT = "Prior Ocular Therapies/Treatments",
   CMSTDTC = 1:5,
   CMLAT   = c("", "LEFT","Bilateral", "", "RIgHT"),
   CMTRT  = c("A", "B", "A", "B", "A"),
   CMDECOD = c("A", "B", "A", "B", "A"),
   #CMROUTE = c("","OPHTHALMIC","INTRAVITREAL","INTRAVITREAL", "opHTHALMIC"),
   stringsAsFactors = FALSE)
check_cm_cmlat_prior_ocular(CM)

CM <- data.frame(
   USUBJID = 1:5,
   CMCAT = "CONCOMITANT MEDICATIONS",
   CMSTDTC = 1:5,
   CMLAT   = c("Left", "LEFT","Bilateral", "RIGHT", "RIgHT"),
   CMTRT  = c("A", "B", "A", "B", "A"),
   CMDECOD = c("A", "B", "A", "B", "A"),
   CMROUTE = c("","OPHTHALMIC","INTRAVITREAL","INTRAVITREAL", "opHTHALMIC"),
   stringsAsFactors = FALSE)
check_cm_cmlat_prior_ocular(CM)

CM <- data.frame(
   USUBJID = 1:5,
   CMCAT = "CONCOMITANT MEDICATIONS",
   CMSTDTC = 1:5,
   CMLAT   = c("Left", "LEFT","Bilateral", "RIGHT", "RIgHT"),
   CMTRT  = c("A", "B", "A", "B", "A"),
   CMDECOD = c("A", "B", "A", "B", "A"),
   #CMROUTE = c("","OPHTHALMIC","INTRAVITREAL","INTRAVITREAL", "opHTHALMIC"),
   stringsAsFactors = FALSE)
check_cm_cmlat_prior_ocular(CM)

CM <- data.frame(
   USUBJID = 1:5,
   CMCAT = c(rep("Prior Ocular Therapies/Treatments",3), rep("Non-Ocular Therapies/Treatments",2)),
   CMSTDTC = 1:5,
   CMLAT   = c("", "LEFT","Bilateral", "", ""),
   CMTRT  = c("A", "B", "A", "B", "A"),
   CMDECOD = c("A", "B", "A", "B", "A"),
   #CMROUTE = c("","OPHTHALMIC","INTRAVITREAL","ORAL", "ORAL"),
   stringsAsFactors = FALSE)
check_cm_cmlat_prior_ocular(CM)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.