check_ae_aeout: Check for inconsistency between AE outcome (AEOUT) and death...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check for inconsistency between AE outcome (AEOUT) and death date (AEDTHDTC)

Description

This check looks for AEs with Death date(AEDTHDTC) but outcome (AEOUT) is not FATAL and conversely AEs with no death date (AEDTHDTC) but outcome (AEOUT) is fatal

Usage

check_ae_aeout(AE, preproc = identity, ...)

Arguments

AE	Adverse Events SDTM dataset with variables USUBJID, AEDTHDTC, AEOUT
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Shumei Chi

Examples

AE <- data.frame(
    USUBJID = 1:8,
    AEDTHDTC = c(NA, "NA", "2015-03-12", "2017-01-22", "1999-11-07","",NA, "2020-01-01"),
    AEOUT = c("", "", "","FATAL","RECOVERED/RESOLVED","FATAL","FATAL", NA),
    AESPID = "FORMNAME-R:13/L:13XXXX",
    stringsAsFactors = FALSE
)

check_ae_aeout(AE)
check_ae_aeout(AE,preproc=roche_derive_rave_row)

AE$AEDTHDTC <- NULL
check_ae_aeout(AE)

AE$AEOUT <- NULL
check_ae_aeout(AE)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.