kd | R Documentation |
Given a covariance matrix and sample size, generate raw data that correspond to the covariance matrix. Data can be generated to match the covariance matrix exactly, or to be a sample from the population covariance matrix.
kd(covmat, n, type = c("exact", "sample"))
covmat |
a symmetric, positive definite covariance matrix |
n |
the sample size for the data that will be generated |
type |
type of data generation. |
By default, R's cov()
function divides by n
-1. The data
generated by this algorithm result in a covariance matrix that matches
covmat
, but you must divide by n
instead of n
-1.
kd
returns a data matrix of dimension n
by
nrow(covmat)
.
Ed Merkle (University of Missouri; merklee@missouri.edu)
Kaiser, H. F. and Dickman, K. (1962). Sample and population score matrices and sample correlation matrices from an arbitrary population correlation matrix. Psychometrika, 27(2), 179–182. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1007/BF02289635")}
#### First Example
## Get data
dat <- HolzingerSwineford1939[ , 7:15]
hs.n <- nrow(dat)
## Covariance matrix divided by n
hscov <- ((hs.n-1)/hs.n) * cov(dat)
## Generate new, raw data corresponding to hscov
newdat <- kd(hscov, hs.n)
## Difference between new covariance matrix and hscov is minimal
newcov <- (hs.n-1)/hs.n * cov(newdat)
summary(as.numeric(hscov - newcov))
## Generate sample data, treating hscov as population matrix
newdat2 <- kd(hscov, hs.n, type = "sample")
#### Another example
## Define a covariance matrix
covmat <- matrix(0, 3, 3)
diag(covmat) <- 1.5
covmat[2:3,1] <- c(1.3, 1.7)
covmat[3,2] <- 2.1
covmat <- covmat + t(covmat)
## Generate data of size 300 that have this covariance matrix
rawdat <- kd(covmat, 300)
## Covariances are exact if we compute sample covariance matrix by
## dividing by n (vs by n - 1)
summary(as.numeric((299/300)*cov(rawdat) - covmat))
## Generate data of size 300 where covmat is the population covariance matrix
rawdat2 <- kd(covmat, 300)
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