sensi_plot.sensiTree_Influ: Graphical diagnostics for class 'sensiTree_Influ'

In sensiPhy: Sensitivity Analysis for Comparative Methods

Description

sensi_plot.sensiTree_Influ Plot results from tree_influ_phylm and tree_influ_phyglm

Usage

## S3 method for class 'sensiTree_Influ'
sensi_plot(x, graphs = "all", ...)

Arguments

x	output from tree_influ_phylm or tree_influ_phyglm
graphs	choose which graph should be printed on the output ("all", 1,2,3 or 4)
...	further arguments to methods

Details

For 'x' from sensiTree_Influ_phylm or sensiTree_Influ_phyglm:

Graph 1: Most common influential species on model estimates. Percentage of iterations (n.tree or n.intra) where the removal of individual species caused significant change in model estimate (sDIFestimate > cutoff).

Graph 2: Shift on model estimate after species removal for most influential species. Small red dots represent individual reruns between different trees or simulations while large red dots represent the average DIFestimate among all iterations.

Author(s)

Gustavo Paterno, Caterina Penone

See Also

ggplot

sensiPhy documentation built on April 14, 2020, 7:15 p.m.