sensi_plot.tree.physig: Graphical diagnostics for class 'tree.physig'
In sensiPhy: Sensitivity Analysis for Comparative Methods

Description Usage Arguments Details Author(s) See Also

sensi_plot_tree.physig Plot results from tree_physig.

1 2	## S3 method for class 'tree.physig' sensi_plot(x, graphs = "all", ...)

`x`	output from `tree_physig`
`graphs`	choose which graph should be printed in the output ("all", 1 or 2)
`...`	further arguments to methods

For 'x' from tree_physig

Graphs 1: Distribution of estimated phylogenetic signal (lambda or K) for each tree Red vertical line represents the average signal among all estimates.

Graph 2: Distribution of p-values for the phylogenetic signal (K or lambda) for each tree. Red vertical line represents the alpha significance level = 0.05.

Caterina Penone and Gustavo Paterno

ggplot, tree_phylm intra_phylm

sensiPhy documentation built on April 14, 2020, 7:15 p.m.