sobolmara: Monte Carlo Estimation of Sobol' Indices via matrix...

In sensitivity: Global Sensitivity Analysis of Model Outputs and Importance Measures

Monte Carlo Estimation of Sobol' Indices via matrix permutations

Description

sobolmara implements the Monte Carlo estimation of the first-order Sobol' sensitivity indices using the formula of Mara and Joseph (2008), called the Mara estimator. This method allows the estimation of all first-order p indices at a cost of 2N model calls (the random sample size), then independently of p (the number of inputs).

Usage

sobolmara(model = NULL, X1, ...)
## S3 method for class 'sobolmara'
tell(x, y = NULL, return.var = NULL, ...)
## S3 method for class 'sobolmara'
print(x, ...)
## S3 method for class 'sobolmara'
plot(x, ylim = c(0, 1), ...)
  ## S3 method for class 'sobolmara'
plotMultOut(x, ylim = c(0, 1), ...)
## S3 method for class 'sobolmara'
ggplot(data, mapping = aes(), ylim = c(0, 1), ..., environment
                 = parent.frame())

Arguments

model	a function, or a model with a predict method, defining the model to analyze.
X1	the random sample.
x	a list of class "sobolmara" storing the state of the sensitivity study (parameters, data, estimates).
data	a list of class "sobolmara" storing the state of the sensitivity study (parameters, data, estimates).
y	a vector of model responses.
return.var	a vector of character strings giving further internal variables names to store in the output object x.
ylim	y-coordinate plotting limits.
mapping	Default list of aesthetic mappings to use for plot. If not specified, must be supplied in each layer added to the plot.
environment	[Deprecated] Used prior to tidy evaluation.
...	any other arguments for model which are passed unchanged each time it is called.

Details

The estimator used by sobolmara is based on rearragement of a unique matrix via random permutations (see Mara and Joseph, 2008). Bootstrap confidence intervals are not available.

Value

sobolmara returns a list of class "sobolmara", containing all the input arguments detailed before, plus the following components:

call	the matched call.
X	a data.frame containing the design of experiments.
y	a vector of model responses.
S	the estimations of the Sobol' sensitivity indices.

Author(s)

Bertrand Iooss

References

Mara, T. and Joseph, O.R. (2008), Comparison of some efficient methods to evaluate the main effect of computer model factors, Journal of Statistical Computation and Simulation, 78:167–178

See Also

sobolroalhs, sobol, sobolMultOut

Examples

# Test case : the non-monotonic Sobol g-function

# The method of sobolmara requires 1 sample
# (there are 8 factors, all following the uniform distribution on [0,1])
n <- 1000
X1 <- data.frame(matrix(runif(8 * n), nrow = n))

# sensitivity analysis
x <- sobolmara(model = sobol.fun, X1 = X1)
print(x)
plot(x)

library(ggplot2)
ggplot(x)

sensitivity documentation built on Sept. 11, 2024, 9:09 p.m.