API for seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series
| Global functions | |
|---|---|
| .check_data | Source code |
| .check_emission_probs | Source code |
| .check_identifiability | Source code |
| .check_initial_probs | Source code |
| .check_observations | Source code |
| .check_transition_probs | Source code |
| .combine_models | Source code |
| .onAttach | Source code |
| .predict_mnhmm | Source code |
| .predict_nhmm | Source code |
| EM | Source code |
| EMx | Source code |
| HMMplot | Source code |
| K | Source code |
| Rcpp_EM_LBFGS_fanhmm | Source code |
| Rcpp_EM_LBFGS_mfanhmm | Source code |
| Rcpp_EM_LBFGS_mnhmm | Source code |
| Rcpp_EM_LBFGS_nhmm | Source code |
| Rcpp_backward_fanhmm | Source code |
| Rcpp_backward_mfanhmm | Source code |
| Rcpp_backward_mnhmm | Source code |
| Rcpp_backward_nhmm | Source code |
| Rcpp_forward_fanhmm | Source code |
| Rcpp_forward_mfanhmm | Source code |
| Rcpp_forward_mnhmm | Source code |
| Rcpp_forward_nhmm | Source code |
| Rcpp_log_objective_fanhmm | Source code |
| Rcpp_log_objective_mfanhmm | Source code |
| Rcpp_log_objective_mnhmm | Source code |
| Rcpp_log_objective_nhmm | Source code |
| Rcpp_loglik_fanhmm | Source code |
| Rcpp_loglik_mfanhmm | Source code |
| Rcpp_loglik_mnhmm | Source code |
| Rcpp_loglik_nhmm | Source code |
| Rcpp_predict_fanhmm | Source code |
| Rcpp_predict_mfanhmm | Source code |
| Rcpp_predict_mnhmm | Source code |
| Rcpp_predict_nhmm | Source code |
| Rcpp_simulate_fanhmm | Source code |
| Rcpp_simulate_mfanhmm | Source code |
| Rcpp_simulate_mnhmm | Source code |
| Rcpp_simulate_nhmm | Source code |
| Rcpp_viterbi_fanhmm | Source code |
| Rcpp_viterbi_mfanhmm | Source code |
| Rcpp_viterbi_mnhmm | Source code |
| Rcpp_viterbi_nhmm | Source code |
| SSPlotter | Source code |
| `cluster_names<-.mhmm` | Source code |
| `cluster_names<-.mnhmm` | Source code |
| `cluster_names<-` | Source code |
| `state_names<-.hmm` | Source code |
| `state_names<-.mhmm` | Source code |
| `state_names<-.mnhmm` | Source code |
| `state_names<-.nhmm` | Source code |
| `state_names<-` | Source code |
| alphabet | Man page |
| biofam3c | Man page |
| bootstrap_coefs | Man page Source code |
| bootstrap_coefs.mnhmm | Man page Source code |
| bootstrap_coefs.nhmm | Man page Source code |
| bootstrap_model | Source code |
| build_hmm | Man page Source code |
| build_lcm | Man page Source code |
| build_mhmm | Man page Source code |
| build_mm | Man page Source code |
| build_mmm | Man page Source code |
| build_mnhmm | Source code |
| build_nhmm | Source code |
| check_formula | Source code |
| cluster_names | Man page Source code |
| cluster_names.mhmm | Source code |
| cluster_names.mnhmm | Source code |
| cluster_names<- | Man page |
| coef.mnhmm | Man page Source code |
| coef.nhmm | Man page Source code |
| colorpalette | Man page |
| compute_A_marginals | Source code |
| compute_y_and_B_marginals | Source code |
| compute_z_marginals | Source code |
| cost_matrix | Source code |
| cost_matrix_clusters | Source code |
| create_Q | Source code |
| create_W_X_B | Source code |
| create_base_nhmm | Source code |
| create_eta_A_inits | Source code |
| create_eta_A_mnhmm | Source code |
| create_eta_A_nhmm | Source code |
| create_eta_B_inits | Source code |
| create_eta_B_mnhmm | Source code |
| create_eta_B_nhmm | Source code |
| create_eta_omega_inits | Source code |
| create_eta_omega_mnhmm | Source code |
| create_eta_pi_inits | Source code |
| create_eta_pi_mnhmm | Source code |
| create_eta_pi_nhmm | Source code |
| create_initial_values | Source code |
| create_initial_values_ | Source code |
| create_inits_matrix | Source code |
| create_inits_vector | Source code |
| create_mpp_data | Source code |
| data_to_stslist | Man page Source code |
| dnm_mnhmm | Source code |
| dnm_nhmm | Source code |
| em_dnm_mnhmm | Source code |
| em_dnm_nhmm | Source code |
| em_mnhmm | Source code |
| em_nhmm | Source code |
| estimate_mnhmm | Man page Source code |
| estimate_nhmm | Man page Source code |
| eta_to_gamma_cube | Source code |
| eta_to_gamma_cube_2d_field | Source code |
| eta_to_gamma_cube_field | Source code |
| eta_to_gamma_mat | Source code |
| eta_to_gamma_mat_field | Source code |
| fanhmm_leaves | Man page |
| fast_quantiles | Source code |
| fill_time | Source code |
| find_lags | Source code |
| find_nonlags | Source code |
| fit_mnhmm | Source code |
| fit_model | Man page Source code |
| fit_nhmm | Source code |
| forward_backward | Man page Source code |
| forward_backward.hmm | Man page Source code |
| forward_backward.mhmm | Man page Source code |
| forward_backward.mnhmm | Man page Source code |
| forward_backward.nhmm | Man page Source code |
| gamma_std_to_gamma | Source code |
| gamma_to_gamma_std | Source code |
| get_A_all | Source code |
| get_B1 | Source code |
| get_B_all | Source code |
| get_cluster_probs | Man page Source code |
| get_cluster_probs.mhmm | Man page Source code |
| get_cluster_probs.mnhmm | Man page Source code |
| get_emission_probs | Man page Source code |
| get_emission_probs.hmm | Man page Source code |
| get_emission_probs.mhmm | Man page Source code |
| get_emission_probs.mnhmm | Man page Source code |
| get_emission_probs.nhmm | Man page Source code |
| get_initial_probs | Man page Source code |
| get_initial_probs.hmm | Man page Source code |
| get_initial_probs.mhmm | Man page Source code |
| get_initial_probs.mnhmm | Man page Source code |
| get_initial_probs.nhmm | Man page Source code |
| get_marginals | Man page Source code |
| get_omega_all | Source code |
| get_pi_all | Source code |
| get_responses | Source code |
| get_transition_probs | Man page Source code |
| get_transition_probs.hmm | Man page Source code |
| get_transition_probs.mhmm | Man page Source code |
| get_transition_probs.mnhmm | Man page Source code |
| get_transition_probs.nhmm | Man page Source code |
| gridplot | Man page Source code |
| hidden_paths | Man page Source code |
| hidden_paths.hmm | Man page Source code |
| hidden_paths.mhmm | Man page Source code |
| hidden_paths.mnhmm | Man page Source code |
| hidden_paths.nhmm | Man page Source code |
| hmm_biofam | Man page |
| hmm_mvad | Man page |
| intercept_only | Source code |
| io | Source code |
| isColor | Source code |
| is_formula | Source code |
| is_list_of_lists | Source code |
| is_pmf | Source code |
| is_stslist | Source code |
| iv | Source code |
| iv_X | Source code |
| joint_probability | Source code |
| leaves | Man page |
| logLik.hmm | Man page Source code |
| logLik.mhmm | Man page Source code |
| logLik.mnhmm | Man page Source code |
| logLik.nhmm | Man page Source code |
| logLikHMM | Source code |
| logLikMixHMM | Source code |
| logSumExp | Source code |
| log_EM | Source code |
| log_EMx | Source code |
| log_forwardbackward | Source code |
| log_forwardbackwardx | Source code |
| log_logLikHMM | Source code |
| log_logLikMixHMM | Source code |
| log_objective | Source code |
| log_objectivex | Source code |
| mHMMplotgrid | Source code |
| mHMMplotint | Source code |
| make_objective_mnhmm | Source code |
| make_objective_nhmm | Source code |
| mc_to_sc | Man page Source code |
| mc_to_sc_data | Man page Source code |
| message_ | Source code |
| mhmm_biofam | Man page |
| mhmm_mvad | Man page |
| model_matrix_cluster_formula | Source code |
| model_matrix_emission_formula | Source code |
| model_matrix_initial_formula | Source code |
| model_matrix_transition_formula | Source code |
| most_probable_cluster | Man page Source code |
| mssplot | Man page Source code |
| nobs.hmm | Man page Source code |
| nobs.mhmm | Man page Source code |
| nobs.mnhmm | Man page Source code |
| nobs.nhmm | Man page Source code |
| objective | Source code |
| objectivex | Source code |
| p_to_eta | Source code |
| permute_clusters | Source code |
| permute_states | Source code |
| plot.hmm | Man page Source code |
| plot.mhmm | Man page Source code |
| plot.ssp | Man page Source code |
| plot_colors | Man page Source code |
| posterior_cluster_probabilities | Man page Source code |
| posterior_probs | Man page Source code |
| posterior_probs.hmm | Man page Source code |
| posterior_probs.mhmm | Man page Source code |
| posterior_probs.mnhmm | Man page Source code |
| posterior_probs.nhmm | Man page Source code |
| predict.mnhmm | Man page Source code |
| predict.nhmm | Man page Source code |
| predict_y_B | Source code |
| predict_z_A | Source code |
| print.hmm | Man page Source code |
| print.mhmm | Man page Source code |
| print.mnhmm | Man page Source code |
| print.nhmm | Man page Source code |
| print.summary_mhmm | Man page Source code |
| print.summary_mnhmm | Source code |
| prob_diff | Source code |
| quantileq | Source code |
| reexports | Man page |
| replace_lags | Source code |
| return_msg | Man page Source code |
| separate_mhmm | Man page Source code |
| seqHMM | Man page |
| seqHMM-deprecated | Man page |
| seqHMM-package | Man page |
| seqdef | Man page |
| seqstatf | Man page |
| simulate_emission_probs | Man page Source code |
| simulate_hmm | Man page Source code |
| simulate_initial_probs | Man page Source code |
| simulate_mhmm | Man page Source code |
| simulate_mnhmm | Man page Source code |
| simulate_nhmm | Man page Source code |
| simulate_transition_probs | Man page Source code |
| softmax | Source code |
| sort_sequences | Man page Source code |
| split_mnhmm | Source code |
| spread_models | Source code |
| ssp | Man page Source code |
| ssplot | Man page Source code |
| ssplotM | Source code |
| stacked_sequence_plot | Man page Source code |
| state_names | Man page Source code |
| state_names.hmm | Man page Source code |
| state_names.mhmm | Man page Source code |
| state_names.mnhmm | Man page Source code |
| state_names.nhmm | Man page Source code |
| state_names<- | Man page |
| state_names<-.hmm | Man page |
| state_names<-.mhmm | Man page |
| state_names<-.mnhmm | Man page |
| state_names<-.nhmm | Man page |
| stop_ | Source code |
| stopifnot_ | Source code |
| stslist_to_data | Man page Source code |
| summary.mhmm | Man page Source code |
| summary.mnhmm | Man page Source code |
| trim_model | Man page Source code |
| tv | Source code |
| tv_X | Source code |
| update.mnhmm | Man page Source code |
| update.nhmm | Man page Source code |
| update_W_for_fanhmm | Source code |
| varcoef | Source code |
| vcov.mhmm | Man page Source code |
| viterbi | Source code |
| viterbix | Source code |
