Nothing
#
# To get annotations corresponding to sequences
#
getAnnot <- function(object, ...) UseMethod("getAnnot")
getAnnot.default <- function(object, ...)
stop(paste("no getAnnot method for objects of class:", class(object)))
getAnnot.list <- function(object, ...)
lapply(seq_len(length(object)), function(i) getAnnot(object[[i]], ...))
getAnnot.SeqFastadna <- function(object, ...) attr(object, "Annot")
getAnnot.SeqFastaAA <- getAnnot.SeqFastadna
getAnnot.SeqAcnucWeb <- function(object, ..., nbl = 100, socket = autosocket()){
#
# Check arguments:
#
if(nbl <= 0){
warning("Negative or zero value for argument nbl, forced to 1.")
nbl <- 1
}
#
# Build request:
#
request <- paste("read_annots&name=", object, "&nl=", nbl, sep = "")
writeLines(request , socket, sep="\n")
#
# Read result from server:
#
res <- readLines(socket , n = nbl)
#
# Remove the "nl=xx&" answer from server on first line:
#
newfirstline <- unlist(strsplit(res[1], "&"))[2]
res[1] <- newfirstline
return(res)
}
getAnnot.qaw <- function(object, ...) getAnnot(object$req, ...)
getAnnot.logical <- function (object, ...)
object # so that NA is returned for virtual lists
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