generateSingleRecombinationVector: Genetates a recombination vector arising from one meiotic...
In sim1000G: Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Description
Usage
Arguments
Examples
Description
Genetates a recombination vector arising from one meiotic event.
The origin of segments is coded as (0 - haplotype1 , 1 - haplotype2 )
Usage
1
Arguments
cm
The length of the region that we want to generate recombination distances.
Examples
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library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
min_maf = 0.12 ,max_maf = NA)
# For realistic data use the function downloadGeneticMap
generateUniformGeneticMap()
generateSingleRecombinationVector( 1:100 )
sim1000G documentation built on June 10, 2019, 1:01 a.m.
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Description Usage Arguments Examples
Description
Genetates a recombination vector arising from one meiotic event. The origin of segments is coded as (0 - haplotype1 , 1 - haplotype2 )
Usage
1 |
Arguments
cm |
The length of the region that we want to generate recombination distances. |
Examples
1 2 3 4 5 6 7 8 9 10 | library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
min_maf = 0.12 ,max_maf = NA)
# For realistic data use the function downloadGeneticMap
generateUniformGeneticMap()
generateSingleRecombinationVector( 1:100 )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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