newNuclearFamily: Simulates genotypes for 1 family with 1 offspring
In sim1000G: Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Description
Usage
Arguments
Value
Examples
Description
Simulates genotypes for 1 family with 1 offspring
Usage
1
newNuclearFamily(family_id)
Arguments
family_id
What will be the family_id (for example: 100)
Value
family structure object
Examples
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library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
min_maf = 0.12 ,max_maf = NA)
genetic_map_of_region = system.file("examples",
"chr4-geneticmap.txt",
package = "sim1000G")
readGeneticMapFromFile(genetic_map_of_region)
startSimulation(vcf, totalNumberOfIndividuals = 1200)
fam1 = newNuclearFamily(1)
fam2 = newNuclearFamily(2)
# See also the documentation on our github page
sim1000G documentation built on June 10, 2019, 1:01 a.m.
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Description Usage Arguments Value Examples
Description
Simulates genotypes for 1 family with 1 offspring
Usage
1 | newNuclearFamily(family_id)
|
Arguments
family_id |
What will be the family_id (for example: 100) |
Value
family structure object
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
min_maf = 0.12 ,max_maf = NA)
genetic_map_of_region = system.file("examples",
"chr4-geneticmap.txt",
package = "sim1000G")
readGeneticMapFromFile(genetic_map_of_region)
startSimulation(vcf, totalNumberOfIndividuals = 1200)
fam1 = newNuclearFamily(1)
fam2 = newNuclearFamily(2)
# See also the documentation on our github page
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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